-=== Options ===
-
- * -co: cutoff for ortholog output (default: 50)
-
- * -t : file-name for output table of all vs. all ortholgy support
-
- * -q : name for query (sequence/node), if this is used, `[`outfile`]` is required as well
-
- * -s : sort (default: 2)
-
- * -u : to output ultra-paralogs (species specific expansions/paralogs)
-
- * -cu: cutoff for ultra-paralog output (default: 50)