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[jalview.git]
/
wiki
/
genetreepreprocessing.wiki
diff --git
a/wiki/genetreepreprocessing.wiki
b/wiki/genetreepreprocessing.wiki
index
5c0d07d
..
25348f9
100644
(file)
--- a/
wiki/genetreepreprocessing.wiki
+++ b/
wiki/genetreepreprocessing.wiki
@@
-1,4
+1,6
@@
-= Gene tree Preprocessing =
+#summary preprocessing of gene trees for speciation/duplication inference
+
+= Gene tree preprocessing =
== Purpose ==
== Purpose ==
@@
-14,8
+16,9
@@
path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree i
== Details ==
== Details ==
-Output is two files:
+Output consists of three files:
* input-name_preprocessed_gene_tree.phylo.xml
* input-name_preprocessed_gene_tree.phylo.xml
+ * input-name_species_present.txt
* input-name_removed_nodes.txt
* input-name_removed_nodes.txt