-.project
+/*.project
+/.classpath
+/.settings/org.eclipse.jdt.core.prefs
/dist
+/clover
/classes
-.externalToolBuilders/Jalview Release indices [Builder].launch
+/tests
+/test-reports
+/test-output
+.externalToolBuilders/*
+/.DS_Store
.DS_Store
/.com.apple.timemachine.supported
+.gitattributes
+TESTNG
+/jalviewApplet.jar
+/benchmarking/lib
+*.class
+/site
+/.gradle
+/build
+/utils/HelpLinksChecker.out
+/getdown/website
+/getdown/full_app
+/getdown/files
+/utils/install4j/jalview-installers-*.install4j
+*.swp
+/bin