<node name="jalview.jbappletgui" type="Package"/>\r
<node name="jalview.math" type="Package"/>\r
<node name="jalview.schemes" type="Package"/>\r
- <node name="jalview.util" type="Package"/>\r
<file path="src/jalview/analysis/AAFrequency.java"/>\r
<file path="src/jalview/io/AlignFile.java"/>\r
<file path="src/jalview/analysis/AlignmentSorter.java"/>\r
- <file path="src/jalview/analysis/AlignmentUtil.java"/>\r
<file path="src/jalview/analysis/AlignSeq.java"/>\r
<file path="src/jalview/io/BLCFile.java"/>\r
<file path="src/jalview/io/ClustalFile.java"/>\r
- <file path="src/jalview/analysis/CompareAlignments.java"/>\r
<file path="src/jalview/analysis/Conservation.java"/>\r
<file path="src/jalview/io/FastaFile.java"/>\r
<file path="src/jalview/io/FileParse.java"/>\r