TER flag added

[jalview.git] / README

diff --git a/README b/README
index 2f4ddec..618a615 100755 (executable)
--- a/README
+++ b/README
@@ -1,10 +1,7 @@
-Jalview Release 2.01\r
--------------------\r
+Jalview Readme\r
+--------------\r
 \r
 \r
-\r
-This is the complete source for Jalview 2.01. \r
-\r
 The source is available as a tar file and comes complete with the GNU General Public License. \r
 \r
 To build the application you will need a J2SDK 1.4+. \r
@@ -22,7 +19,15 @@ To run application:
 \r
 java -Djava.ext.dirs=JALVIEW_HOME/lib -cp JALVIEW_HOME/jalview.jar jalview.bin.Jalview\r
 \r
-Replace JALVIEW_HOME with the full path to Jalview Installation Directory. If using Windows, use backslash "\" instead of forward slash "/"\r
+Replace JALVIEW_HOME with the full path to Jalview Installation Directory.
 \r
 ##################\r
 \r
+\r
+If you use a proxy server add \r
+\r
+-Dhttp.proxyServer=YOUR.SERVER -Dhttp.proxyPort=YOURPORT\r
+\r
+If the proxy server requires authentication, add\r
+\r
+-Dhttp.proxyUser=USERNAME -Dhttp.proxyPassword=PASSWORD\r