-Jalview Readme
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+Download and install a clean eclipse-jee-2019-06
+In gradle.properties edit `jalviewjs_eclipse_root` to point to the root dir.
+If you're on a mac, DO NOT include the Eclipse.app folder in the path (use the path up to this point, but not the .app folder).
+You can use a '~' as the first character which will get replaced with System.getProperty("user.home").
-The source is available as a tar file and comes complete with the GNU General Public License.
+Note that the gradle tasks will take care of copying net.sf.j2s.core.jar and the com.seeq.eclipse.importprojects.jar into the dropins and plugins dir (on either unix or mac -- not tested on windows yet).
-To build the application you will need a J2SDK 1.7+.
-An Ant build file (build.xml) is provided, you will need to install Apache Ant first.
-Run ant to view usage which will display a list of useful build targets.
+gradle tasks of interest:
-Jalview is primarily developed with eclipse, and a .project file is provided to simplify importing the source into your own eclipse workspace. A NetBeans nbbuild.xml file is also provided for developing Jalview with NetBeans - but this is not officially supported.
-You may also be able to use Borland JBuilder to build Jalview. A JBuilder project file
-(JalviewX.jpx, JalviewApplet.jpx) for both application and applet is provided,
-but the library dependencies are almost certainly out of date. See the build.xml
-for current dependencies.
-For more help, read the file doc/building.html
+gradle jalviewjs # (should build the .../site dir)
+gradle jalviewjsSiteTar # will produce build/distribution/site.tar.gz
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+gradle jalviewjsTranspile # should run a new eclipse compile+transpile
-To run application:
+gradle jalviewjsServer # will run a localhost http server to allow you to test the site in a browser. Just use the URL given in the output.
-java -classpath "JALVIEW_HOME/lib/*:JALVIEW_HOME/jalview.jar" jalview.bin.Jalview
-Replace JALVIEW_HOME with the full path to Jalview Installation Directory. If building from source:
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-java -classpath "JALVIEW_BUILD/dist/*" jalview.bin.Jalview
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-If you use a proxy server add
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--Dhttp.proxyServer=YOUR.SERVER -Dhttp.proxyPort=YOURPORT
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-If the proxy server requires authentication, add
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--Dhttp.proxyUser=USERNAME -Dhttp.proxyPassword=PASSWORD