The source is available as a tar file and comes complete with the GNU General Public License.
-To build the application you will need a J2SDK 1.6+.
+To build the application you will need a J2SDK 1.7+.
An Ant build file (build.xml) is provided, you will need to install Apache Ant first.
Run ant to view usage which will display a list of useful build targets.
To run application:
-java -Djava.ext.dirs=JALVIEW_HOME/lib -cp JALVIEW_HOME/jalview.jar jalview.bin.Jalview
+java -classpath "JALVIEW_HOME/lib/*:JALVIEW_HOME/jalview.jar" jalview.bin.Jalview
+
+Replace JALVIEW_HOME with the full path to Jalview Installation Directory. If building from source:
+
+java -classpath "JALVIEW_BUILD/dist/*" jalview.bin.Jalview
-Replace JALVIEW_HOME with the full path to Jalview Installation Directory.
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