To set up benchmarking:
-1. In the jalview directory run
+You will need to install Maven: https://maven.apache.org/install.html
+
+1. Run the makedist target of build.xml in Eclipse, or in the jalview directory run
ant makedist
This builds a jalview.jar file and puts it into dist/
-2. Make a lib directory in benchmarking/ if not already present.
+2. Make a lib directory in benchmarking/ if not already present and cd into this directory.
3. Purge any previous maven dependencies:
mvn dependency:purge-local-repository -DactTransitively=false -DreResolve=false