import groovy.util.XmlParser
import groovy.xml.XmlUtil
+
buildscript {
+ repositories {
+ mavenCentral()
+ mavenLocal()
+ }
dependencies {
classpath 'org.openclover:clover:4.4.1'
}
}
+
plugins {
id 'java'
id 'application'
id 'eclipse'
id 'com.github.johnrengelman.shadow' version '4.0.3'
- id 'com.install4j.gradle' version '8.0.2'
+ id 'com.install4j.gradle' version '8.0.4'
id 'com.dorongold.task-tree' version '1.5' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
}
jcenter()
mavenCentral()
mavenLocal()
- flatDir {
- dirs gradlePluginsDir
- }
-}
-
-dependencies {
}
// clover
cloverInstrDir = file("${buildDir}/${cloverSourcesInstrDir}")
+ cloverDb = string("${buildDir}/clover/clover.db")
classesDir = string("${jalviewDir}/${classes_dir}")
if (clover.equals("true")) {
use_clover = true
getdownChannelName = string("${bamboo_planKey}/${JAVA_VERSION}")
getdownAppBase = string("${bamboo_channelbase}/${bamboo_planKey}${bamboo_getdown_channel_suffix}/${JAVA_VERSION}")
jvlChannelName += "_${getdownChannelName}"
+ // automatically add the test group Not-bamboo for exclusion
+ if ("".equals(testngExcludedGroups)) {
+ testngExcludedGroups = "Not-bamboo"
+ }
break
case "RELEASE":
}
}
-
configurations {
cloverRuntime
cloverRuntime.extendsFrom cloverCompile
}
+
+// eclipse project and settings files creation, also used by buildship
eclipse {
project {
name = eclipse_project_name
}
-task cloverInstr() {
+task cloverInstr {
// only instrument source, we build test classes as normal
inputs.files files (sourceSets.main.allJava,sourceSets.test.allJava) // , fileTree(dir:"$jalviewDir/$testSourceDir", include: ["**/*.java"]))
outputs.dir cloverInstrDir
doFirst {
delete cloverInstrDir
- def argsList = ["--initstring", "${buildDir}/clover/clover.db",
- "-d", "${buildDir}/${cloverSourcesInstrDir}"]
- argsList.addAll(inputs.files.files.collect({ file ->
- file.absolutePath
- }))
+ def argsList = [
+ "--initstring",
+ cloverDb,
+ "-d",
+ cloverInstrDir.getPath(),
+ ]
+ argsList.addAll(
+ inputs.files.files.collect(
+ { file -> file.absolutePath }
+ )
+ )
String[] args = argsList.toArray()
println("About to instrument "+args.length +" files")
com.atlassian.clover.CloverInstr.mainImpl(args)
}
+cloverClasses.dependsOn cloverInstr
+
+
task cloverReport {
group = "Verification"
- description = "Createst the Clover report"
- inputs.dir "${buildDir}/clover"
- outputs.dir "${reportsDir}/clover"
- onlyIf {
- file("${buildDir}/clover/clover.db").exists()
- }
+ description = "Creates the Clover report"
+ inputs.dir "${buildDir}/clover"
+ outputs.dir "${reportsDir}/clover"
+ onlyIf {
+ file(cloverDb).exists()
+ }
doFirst {
- def argsList = ["--initstring", "${buildDir}/clover/clover.db",
- "-o", "${reportsDir}/clover"]
+ def argsList = [
+ "--initstring",
+ cloverDb,
+ "-o",
+ "${reportsDir}/clover"
+ ]
String[] args = argsList.toArray()
com.atlassian.clover.reporters.html.HtmlReporter.runReport(args)
// and generate ${reportsDir}/clover/clover.xml
- args = ["--initstring", "${buildDir}/clover/clover.db",
- "-o", "${reportsDir}/clover/clover.xml"].toArray()
+ args = [
+ "--initstring",
+ cloverDb,
+ "-o",
+ "${reportsDir}/clover/clover.xml"
+ ].toArray()
com.atlassian.clover.reporters.xml.XMLReporter.runReport(args)
}
}
+
+
+compileCloverJava {
+
+ doFirst {
+ sourceCompatibility = compile_source_compatibility
+ targetCompatibility = compile_target_compatibility
+ options.compilerArgs += additional_compiler_args
+ print ("Setting target compatibility to "+targetCompatibility+"\n")
+ }
+ classpath += configurations.cloverRuntime
+}
+
+
+task cleanClover {
+ doFirst {
+ delete cloverInstrDir
+ delete cloverDb
+ }
+}
// end clover bits
}
-compileCloverJava {
-
- doFirst {
- sourceCompatibility = compile_source_compatibility
- targetCompatibility = compile_target_compatibility
- options.compilerArgs += additional_compiler_args
- print ("Setting target compatibility to "+targetCompatibility+"\n")
- }
- classpath += configurations.cloverRuntime
-}
-
-
clean {
doFirst {
delete sourceSets.main.java.outputDir
cleanTest {
+ dependsOn cleanClover
doFirst {
delete sourceSets.test.java.outputDir
- delete cloverInstrDir
}
}
useTestNG() {
includeGroups testngGroups
+ excludeGroups testngExcludedGroups
preserveOrder true
useDefaultListeners=true
}
+ maxHeapSize = "1024m"
+
workingDir = jalviewDir
//systemProperties 'clover.jar' System.properties.clover.jar
sourceCompatibility = compile_source_compatibility
into project.name
- def EXCLUDE_FILES=["build/*","bin/*","test-output/","test-reports","tests","clover*/*"
- ,".*"
- ,"benchmarking/*"
- ,"**/.*"
- ,"*.class"
- ,"**/*.class","${j11modDir}/**/*.jar","appletlib","**/*locales"
- ,"*locales/**",
- ,"utils/InstallAnywhere"]
- def PROCESS_FILES=[ "AUTHORS",
- "CITATION",
- "FEATURETODO",
- "JAVA-11-README",
- "FEATURETODO",
- "LICENSE",
- "**/README",
- "RELEASE",
- "THIRDPARTYLIBS","TESTNG",
- "build.gradle",
- "gradle.properties",
- "**/*.java",
- "**/*.html",
- "**/*.xml",
- "**/*.gradle",
- "**/*.groovy",
- "**/*.properties",
- "**/*.perl",
- "**/*.sh"]
+ def EXCLUDE_FILES=[
+ "build/*",
+ "bin/*",
+ "test-output/",
+ "test-reports",
+ "tests",
+ "clover*/*",
+ ".*",
+ "benchmarking/*",
+ "**/.*",
+ "*.class",
+ "**/*.class","$j11modDir/**/*.jar","appletlib","**/*locales",
+ "*locales/**",
+ "utils/InstallAnywhere",
+ "**/*.log",
+ ]
+ def PROCESS_FILES=[
+ "AUTHORS",
+ "CITATION",
+ "FEATURETODO",
+ "JAVA-11-README",
+ "FEATURETODO",
+ "LICENSE",
+ "**/README",
+ "RELEASE",
+ "THIRDPARTYLIBS",
+ "TESTNG",
+ "build.gradle",
+ "gradle.properties",
+ "**/*.java",
+ "**/*.html",
+ "**/*.xml",
+ "**/*.gradle",
+ "**/*.groovy",
+ "**/*.properties",
+ "**/*.perl",
+ "**/*.sh",
+ ]
+ def INCLUDE_FILES=[
+ ".settings/org.eclipse.jdt.core.jalview.prefs",
+ ]
from(jalviewDir) {
exclude (EXCLUDE_FILES)
exclude (getdown_website_dir)
// exluding these as not using jars as modules yet
- exclude ("${j11modDir}/**/*.jar")
- }
- // from (jalviewDir) {
- // // explicit includes for stuff that seemed to not get included
- // include(fileTree("test/**/*."))
- // exclude(EXCLUDE_FILES)
- // exclude(PROCESS_FILES)
- // }
+ exclude ("$j11modDir/**/*.jar")
+ }
+ from(jalviewDir) {
+ include(INCLUDE_FILES)
+ }
+// from (jalviewDir) {
+// // explicit includes for stuff that seemed to not get included
+// include(fileTree("test/**/*."))
+// exclude(EXCLUDE_FILES)
+// exclude(PROCESS_FILES)
+// }
}