JAL-3449 ensuring latest getdown jar files after merge

[jalview.git] / build.gradle

diff --git a/build.gradle b/build.gradle
index 522ce38..bd31eaa 100644 (file)
--- a/build.gradle
+++ b/build.gradle
@@ -9,7 +9,7 @@ import groovy.xml.XmlUtil
 
 buildscript {
   dependencies {
-    classpath 'org.openclover:clover:4.3.1'
+    classpath 'org.openclover:clover:4.4.1'
   }
 }
 
@@ -32,7 +32,6 @@ repositories {
 }
 
 dependencies {
-  compile 'org.apache.commons:commons-compress:1.18'
 }
 
 
@@ -185,6 +184,15 @@ ext {
     reportRsyncCommand = true
     break
 
+    case "TEST-LOCAL":
+    if (!file("${LOCALDIR}").exists()) {
+      throw new GradleException("Must provide a LOCALDIR value to produce a local distribution")
+    } else {
+      getdownAppBase = file(file("${LOCALDIR}").getAbsolutePath()).toURI().toString()
+      getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher_local}")
+    }
+    break
+
     case "LOCAL":
     getdownAppBase = file(getdownWebsiteDir).toURI().toString()
     getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher_local}")
@@ -376,7 +384,7 @@ sourceSets {
     compileClasspath = files( sourceSets.test.java.outputDir )
 
     if (use_clover) {
-      compileClasspath += sourceSets.clover.compileClasspath
+      compileClasspath = sourceSets.clover.compileClasspath
     } else {
       compileClasspath += files(sourceSets.main.java.outputDir)
     }
@@ -393,8 +401,8 @@ sourceSets {
 // clover bits
 dependencies {
   if (use_clover) {
-    cloverCompile 'org.openclover:clover:4.3.1'
-    testCompile 'org.openclover:clover:4.3.1'
+    cloverCompile 'org.openclover:clover:4.4.1'
+    testCompile 'org.openclover:clover:4.4.1'
   }
 }
 
@@ -540,7 +548,7 @@ eclipse {
 
 task cloverInstr() {
   // only instrument source, we build test classes as normal
-  inputs.files files (sourceSets.main.allJava) // , fileTree(dir: testSourceDir, include: ["**/*.java"]))
+  inputs.files files (sourceSets.main.allJava,sourceSets.test.allJava) // , fileTree(dir:"$jalviewDir/$testSourceDir", include: ["**/*.java"]))
   outputs.dir cloverInstrDir
 
   doFirst {