JAL-1713 fix typo; overview in project with open overview in preferences

[jalview.git] / build.gradle

diff --git a/build.gradle b/build.gradle
index f298bd7..ed0182d 100644 (file)
--- a/build.gradle
+++ b/build.gradle
@@ -1084,6 +1084,7 @@ def convertMdToHtml (FileTree mdFiles, File cssFile) {
 
     def htmlFilePath = mdFile.getPath().replaceAll(/\..*?$/, ".html")
     def htmlFile = file(htmlFilePath)
+    println("Creating ${htmlFilePath}")
     htmlFile.text = htmlText
   }
 }
@@ -1121,7 +1122,7 @@ task copyDocs(type: Copy) {
 
 task convertMdFiles {
   dependsOn copyDocs
-  def mdFiles = fileTree(dir: docBuildDir, include: "*.md")
+  def mdFiles = fileTree(dir: docBuildDir, include: "**/*.md")
   def cssFile = file("${jalviewDir}/${flexmark_css}")
 
   doLast {
@@ -1357,7 +1358,8 @@ jar {
     "Implementation-Version": JALVIEW_VERSION
   }
 
-  destinationDirectory = file("${jalviewDir}/${package_dir}")
+  def outputDir = "${jalviewDir}/${package_dir}"
+  destinationDirectory = file(outputDir)
   archiveFileName = rootProject.name+".jar"
 
   exclude "cache*/**"
@@ -1370,7 +1372,7 @@ jar {
   sourceSets.main.resources.srcDirs.each{ dir ->
     inputs.dir(dir)
   }
-  outputs.file("${destinationDirectory}/${archiveFileName}")
+  outputs.file("${outputDir}/${archiveFileName}")
 }