<?xml version="1.0"?>
- <project name="jalviewX" default="build" basedir=".">
+ <project name="jalviewX" default="usage" basedir=".">
<!-- we use jalopy to format our sources -->
<taskdef name="jalopy"
classname="de.hunsicker.jalopy.plugin.ant.AntPlugin">
</fileset>
</classpath>
</taskdef>
+
+ <target name="help" depends="usage"/>
+ <target name="usage">
+ <echo message="~~~Jalview Ant build.xml Usage~~~~"/>
+ <echo message="Targets include:"/>
+ <echo message="usage - default target, displays this message"/>
+ <echo message="buildindices - generates JavaHelpSearch from the help files"/>
+ <echo message="build - compiles all necessary files for Application"/>
+ <echo message="makedist - compiles and places all necessary jar files into directory dist"/>
+ <echo message="makefulldist - signs all jar files and builds jnlp file for full distribution"/>
+ <echo message=" this needs a keystore and key. See docs/building.html for more information."/>
+ <echo message="compileApplet - compiles all necessary files for Applet"/>
+ <echo message="makeApplet - compiles, then packages and obfuscates the Applet"/>
+ <echo message="See docs/building.html and the comments in build file for other targets."/>
+ </target>
+
+
<!-- utils is a class path to additional utilities needed for
building docs, jars and webstart stuff -->
<include name="*.jar"/>
</fileset> -->
</path>
-
- <property name="" value=""/>
+ <!-- Jalview Version String displayed by application on startup and used to check for updates -->
+ <property name="JALVIEW_VERSION" value="2.2"/>
+ <!-- Don't change anything below here unless you know what you are doing! -->
+ <!-- Url path for WebStart in JNLP file -->
+ <property name="WebStartLocation" value="http://www.jalview.org/webstart"/>
+ <!-- build directory configuration -->
<property name="libDir" value="lib"/>
<property name="resourceDir" value="resources"/>
<property name="helpDir" value="help"/>
<property name="outputDir" value="classes" />
<property name="packageDir" value="dist" />
<property name="outputJar" value="jalview.jar" />
+ <!-- Jalview Web Service Clients - see the comments in 'buildextclients' for details -->
<property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
<property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
<property name="wsdl.MsaWS" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS?wsdl" />
<property name="wsdl.MsaWS2" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS?wsdl" />
- <property name="wsdl.MsaWS2" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS?wsdl" />
- <property name="WSInterf" value="MsaWS" />
- <property name="WebStartLocation" value="http://www.jalview.org/webstart"/>
+ <property name="WSInterf" value="MsaWS" />
<property name="wsdl.Namespace" value="vamsas" />
<property name="wsdl.ClientNS" value="ext.vamsas" />
-
+ <!-- the class path for building the application -->
<path id="build.classpath">
<fileset dir="utils">
<include name="*.jar"/>
<include name="*.jar"/>
<include name="**/*.jar"/>
</fileset>
-<!-- <fileset dir="old_lib_signed">
-<include name="lib_axis.jar"/>
-
- </fileset>-->
</path>
- <!--> <uptodate property="help.uptodate"
- targetfile="${helpDir}/helpIndex.xml">
- <srcfiles
- dir="${helpDir}"
- includes="**/*.html" />
- </uptodate>
- -->
</target>
+
+ <taskdef classpath="utils/roxes-ant-tasks-1.2-2004-01-30.jar" resource="com/roxes/tools/ant/taskdefs.properties"/>
+ <target name="buildPropertiesFile" depends="init">
+ <tstamp prefix="build">
+ <format property="date" pattern="dd MMMM yyyy"/>
+ </tstamp>
+ <properties file="${outputDir}/.build_properties">
+ <header>
+ ---Jalview Build Details---
+ </header>
+ <property name="VERSION" value="${JALVIEW_VERSION}"/>
+ <property name="BUILD_DATE" value="${build.date}"/>
+ </properties>
+ </target>
+
+
<target name="clean" depends="init">
<!-- not efficient yet. -->
<delete dir="${outputDir}"/>
<mkdir dir="${outputDir}"/>
<copy todir="${outputDir}">
<fileset dir=".">
-
<include name="${docDir}/**/*.*"/>
<include name="${helpDir}/**/*.*"/>
- <include name="${libDir}/*.*"/>
+ <include name="${libDir}/*.jar"/>
</fileset>
<fileset dir="${resourceDir}">
<include name="**/*.*"/>
<target name="build" depends="prepare">
<!-- not efficient yet. -->
- <javac source="1.4" target="1.4" srcdir="${sourceDir}" destdir="${outputDir}"
- classpathref="build.classpath" />
+ <javac source="1.4" target="1.4"
+ srcdir ="${sourceDir}"
+ destdir="${outputDir}"
+ classpathref="build.classpath">
+ <exclude name="jalview/*applet*"/>
+ <exclude name="com/stevesoft/**"/>
+ </javac>
</target>
<target name="buildindices" depends="init, prepare"
unless="help.uptodate">
</java>
</target>
- <target name="makejars" depends="build, buildindices">
- <!-- make the package jar -->
- <mkdir dir="${packageDir}"/>
-
- <jar destfile="${packageDir}/${outputJar}">
- <fileset dir="${outputDir}/">
- <exclude name="*.jar" />
- <exclude name="*.jar.*" />
- <exclude name="**/*.jar" />
- <exclude name="**/*.jar.*" />
- </fileset>
- </jar>
-
- <copy toDir="${packageDir}" flatten="true">
- <fileset dir="${outputDir}">
- <include name="*.jar"/>
- <include name="**/*.jar"/>
- </fileset>
- </copy>
-<!-- the default keystore details might need to be edited here -->
+ <target name="makefulldist" depends="makedist">
+ <!-- the default keystore details might need to be edited here -->
<signjar
storepass="alignmentisfun"
keypass="alignmentisfun"
<taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
<!-- codebase="http://www.jalview.org/jalview/webstart" -->
- <jnlp toFile="${packageDir}/Jalview.jnlp" href="Jalview.jnlp"
+ <jnlp toFile="${packageDir}/jalview.jnlp" href="jalview.jnlp"
codebase="${WebStartLocation}">
<information>
<title>Jalview</title>
- <vendor>Barton Group</vendor>
- <homepage href="www.jalview.org"/>
+ <vendor>The Barton Group</vendor>
+ <homepage href="http://www.jalview.org"/>
<description>Jalview Multiple Alignment Editor</description>
<description kind="short">Jalview</description>
- <icon href="BartonGroupBanner.gif"/>
- </information>
+ <icon href="logo_big.gif"/>
+ <offline_allowed/>
+ <!--
+ <association mime-type="application-x/ext-file" extensions="fa"/>
+ <association mime-type="application-x/ext-file" extensions="fasta"/>
+ <association mime-type="application-x/ext-file" extensions="fastq"/>
+ <association mime-type="application-x/ext-file" extensions="blc"/>
+ <association mime-type="application-x/ext-file" extensions="msf"/>
+ <association mime-type="application-x/ext-file" extensions="pfam"/>
+ <association mime-type="application-x/ext-file" extensions="aln"/>
+ <association mime-type="application-x/ext-file" extensions="pir"/>
+ -->
+ </information>
<resources>
- <j2se version="1.3+"/>
+ <j2se version="1.4+"/>
<fileset dir="${packageDir}">
<include name="jalview.jar"/>
</fileset>
<include name="*.jar"/>
<exclude name="jalview.jar"/>
</fileset>
+ <property name="jalview.version" value="${JALVIEW_VERSION}"/>
</resources>
<application_desc main_class="jalview.bin.Jalview">
</application_desc>
</target>
<target name="buildextclients" depends="init">
+ <input message="Building external client source from WSDLs - Do you really want to do this ? (Yy/Nn)"
+ validargs="Y,y,n,N" defaultvalue="N"
+ addproperty="doextbuild.response"/>
+ <condition property="dontextbuild">
+ <equals arg1="n" arg2="${doextbuild.response}"/>
+ </condition>
+ <condition property="dontextbuild">
+ <equals arg1="N" arg2="${doextbuild.response}"/>
+ </condition>
+ <fail if="dontextbuild">
+ Build External Client Code process aborted by user. Jalview source is unchanged.
+ </fail>
<!-- Currently, this doesn't happen automatically.
1. Run WSDL2Java as below, which generates an ext.vamsas +
vamsas.<datapackages> fileset.
-->
<path id="axisbuild">
- <!-- <path refid="axis.classpath"/> -->
<path refid="build.classpath"/>
</path>
<taskdef resource="axis-tasks.properties" classpathref="axisbuild"/>
package="${wsdl.ClientNS}"/>
</mappingSet>
</axis-wsdl2java>
+ </target>
- </target>
- <target name="package" depends="init, build">
+ <target name="makedist" depends="build, buildPropertiesFile, buildindices">
+ <!-- make the package jar -->
+ <mkdir dir="${packageDir}"/>
+ <jar destfile="${packageDir}/${outputJar}">
+ <manifest>
+ <attribute name="Main-Class" value="jalview.bin.Jalview"/>
+ </manifest>
+ <fileset dir="${outputDir}/">
+ <exclude name="cache*/**"/>
+ <exclude name="*.jar" />
+ <exclude name="*.jar.*" />
+ <exclude name="**/*.jar" />
+ <exclude name="**/*.jar.*" />
+ </fileset>
+ </jar>
+
+ <copy toDir="${packageDir}" flatten="true">
+ <fileset dir="${outputDir}">
+ <include name="*.jar"/>
+ <include name="**/*.jar"/>
+ </fileset>
+ </copy>
</target>
+
+
<!-- jalopy code reformatter -->
<target name="sourcescrub" depends="init,build">
<jalopy destdir="jsrc" classpathref="run.classpath"
</jalopy>
</target>
+
+
+ <!-- Compile, package and obfuscate Jalview Applet -->
+ <target name="makeApplet" depends="obfuscate"/>
+
+ <target name="compileApplet" depends="init,clean">
+ <mkdir dir="${outputDir}"/>
+ <javac source="1.2" target="1.1" srcdir="${sourceDir}" destdir="${outputDir}"
+ includes="jalview/analysis/**,jalview/appletgui/**,jalview/datamodel/**jalview/jbappletgui/**,jalview/math/**,jalview/schemes/**"
+ excludes="ext/**,MCview/**,org/**,vamsas/**"/>
+ </target>
+
+ <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
+ <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif"/>
+ <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif"/>
+ <jar destfile="in.jar">
+ <manifest>
+ <attribute name="Main-Class" value="jalview.bin.JalviewLite"/>
+ </manifest>
+ <fileset dir="${outputDir}">
+ <include name="com/**"/>
+ <include name="MCview/**"/>
+ <include name="jalview/**"/>
+ <include name=".build_properties"/>
+ <include name="images/idwidth.gif"/>
+ <include name="images/link.gif"/>
+ </fileset>
+ </jar>
+ </target>
+
+ <target name="obfuscate" depends="packageApplet">
+ <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+ <proguard>
+ -libraryjars "${java.home}/lib/rt.jar"
+ -injars in.jar
+ -outjars jalviewApplet.jar
+ -keep public class jalview.bin.JalviewLite
+ { public * ; }
+ </proguard>
+ <delete file="in.jar"/>
+ </target>
+
+
</project>
git://source.jalview.org / jalview.git / blobdiff