<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
<!-- Jalview Applet JMol Jar Dependency -->
<property name="jmolJar" value="JmolApplet-12.2.4.jar" />
<property name="varnaJar" value="VARNAv3-91.jar" />
+ <property name="jsoup" value="jsoup-1.8.1.jar" />
+ <property name="jsonSimple" value="json_simple-1.1.jar" />
+ <property name="javaJson" value="java-json.jar" />
<property name="jalviewLiteJar" value="jalviewApplet.jar" />
<!-- switch to indicate if we should obfuscate jalviewLite -->
<!-- <property name="donotobfuscate" value="true"/> -->
</fileset>
<pathelement location="appletlib/${jmolJar}" />
<pathelement location="lib/${varnaJar}" />
+ <pathelement location="lib/${jsoup}" />
+ <pathelement location="lib/${jsonSimple}" />
+ <pathelement location="lib/${javaJson}" />
+
</path>
<!-- default location for outputting javadoc -->
<property name="javadocDir" value="${packageDir}/javadoc"/>
<exclude name="jalview.jar" />
<exclude name="*jnilib.jar"/>
</fileset>
+ </resources>
+ <resources os="Mac OS X">
<property name="jalview.version" value="${JALVIEW_VERSION}" />
- <fileset dir="${packageDir}" os="Mac OS X">
+ <fileset dir="${packageDir}">
<include name="*quaqua*.jnilib.jar"/>
</fileset>
</resources>
</signjar>
<!-- bizarre bug causes JmolApplet to always get signed, even if excluded from above. so copy explicitly -->
<copy file="appletlib/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}" overwrite="true" />
+ <!-- finally, replace any launchApp servlet tags with a version specification -->
+ <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}"">
+ <replacetoken><![CDATA[http://www.jalview.org/services/launchApp"]]></replacetoken>
+ <fileset dir="${packageDir}/examples">
+ <include name="**/*.html"/>
+ </fileset>
+ </replace>
+ <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}'">
+ <replacetoken><![CDATA[http://www.jalview.org/services/launchApp']]></replacetoken>
+ <fileset dir="${packageDir}/examples">
+ <include name="**/*.html"/>
+ </fileset>
+ </replace>
+
</target>
<target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
<javadoc destdir="${javadocDir}">