JAL-1541 exclude all unnecessary jalview.io classes from applet build

[jalview.git] / build.xml

diff --git a/build.xml b/build.xml
index 283e492..3705821 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -83,7 +83,7 @@
     <!-- Webstart Image - looked for in resources/images -->
     <property name="WebStartImage" value="JalviewLogo_big.png"/>
     <!-- J2SE version needed for webstart launch -->
-<!-- Anne's version needs 1.7 - should rebuild VARNA to java 1.6 for release -->
+    <!-- Anne's version needs 1.7 - should rebuild VARNA to java 1.6 for release -->
     <property name="j2sev" value="1.7+"/>
 
     <!-- Permissions for running Java applets and applications. -->
@@ -106,14 +106,14 @@
     <property name="outputJar" value="jalview.jar" />
     <!-- Jalview Applet JMol Jar Dependency -->
     <property name="jmolJar" value="JmolApplet-12.2.4.jar" />
-    <property name="varnaJar" value="VARNAv3-9.jar" />
+    <property name="varnaJar" value="VARNAv3-91.jar" />
     <property name="jalviewLiteJar" value="jalviewApplet.jar" />
     <!-- switch to indicate if we should obfuscate jalviewLite -->
     <!-- <property name="donotobfuscate" value="true"/> -->
     <!-- switch to exclude associations from generated jnlp files -->
     <!-- <property name="nojnlpfileassocs" value="true"/> -->
 
-    <!-- Jalview Web Service Clients - see the comments in 'buildextclients' for details -->
+    <!-- Jalview Web Service Clients - see the comments in 'buildextexcclients' for details -->
     <property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
     <property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
     <property name="wsdl.MsaWS" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS?wsdl" />
@@ -138,7 +138,7 @@
         <!-- the JmolApplet includes the JmolApplet console and the application javac seems to always try and build all packages 
                                -->
         <include name="${jmolJar}" />
-       <include name="${varnaJar}" />
+        <include name="${varnaJar}" />
       </fileset>
 
     </path>
@@ -356,13 +356,13 @@
     </presetdef>
 
     <jnlpf toFile="${jnlpFile}"/>
-  
+
   </target>
-  
+
   <target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
     <echo message="Not adding JNLP File Associations"/>
   </target>
-  
+
   <target name="-dojnlpfileassoc" depends="-generatejnlpf" unless="nojnlpfileassocs">
     <replace file="${jnlpFile}">
       <replacetoken>
@@ -382,9 +382,9 @@
         <association mime-type="application-x/ext-file" extensions="stk"/>
         <association mime-type="application-x/ext-file" extensions="jvp"/>
       </information>]]></replacevalue>
-    </replace>
-    <echo message="Added file associations to JNLP file"/>
-    </target>
+  </replace>
+  <echo message="Added file associations to JNLP file"/>
+</target>
 <target name="writejnlpf" depends="-dojnlpfileassoc,-dofakejnlpfileassoc">
 </target>
 
@@ -481,7 +481,7 @@
   <mkdir dir="${outputDir}" />
   <javac source="1.5" target="1.5" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" 
                        classpathref="jalviewlite.deps" includes="jalview/appletgui/**"
-                       excludes="ext/**,MCview/**,org/**,vamsas/**,jalview/ext/paradise/**" />
+                       excludes="ext/**,MCview/**,org/**,vamsas/**,jalview/io/**,jalview/ext/paradise/**" />
 </target>
 
 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">