Merge branch 'JAL-957_jbake' into Release_2_8_Branch

[jalview.git] / build.xml

diff --git a/build.xml b/build.xml
index f2a9daf..6487a2d 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -350,6 +350,7 @@
     <!--
                                <association mime-type="application-x/ext-file" extensions="fa"/>
         <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="mfa"/>
         <association mime-type="application-x/ext-file" extensions="fastq"/>
         <association mime-type="application-x/ext-file" extensions="blc"/>
         <association mime-type="application-x/ext-file" extensions="msf"/>
@@ -622,7 +623,7 @@
                         Preserves Pre-Java 1.7_u45 behavior once 'permissions' parameter added to applet tag 
                        -->
 
-      <jar update="true" index="true" jarfile="@{jarfile}">
+      <jar update="true" index="true">
         <manifest>
           <attribute name="Application-Name" value="JalviewLite" />
           <attribute name="Permissions" value="sandbox" />
@@ -642,7 +643,7 @@
                               
                              -->
 
-      <jar update="true" index="true" jarfile="@{jarfile}">
+      <jar update="true" index="true">
         <manifest>
           <attribute name="Application-Name" value="JalviewLite" />
           <attribute name="Permissions" value="all-permissions" />
@@ -654,7 +655,7 @@
     </presetdef>
     <presetdef name="to_applet.jar">
       <!-- not fully test variant (yet) -->
-      <jar update="true" index="true" jarfile="@{jarfile}">
+      <jar update="true" index="true">
         <manifest>
           <attribute name="Application-Name" value="JalviewLite" />
           <attribute name="Permissions" value="all-permissions" />
@@ -664,6 +665,8 @@
       </jar>
     </presetdef>
     <!-- create differently privileged artefacts -->
+    <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/u_${jalviewLiteJar}" />
+    <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}"/>
     <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/ap_${jalviewLiteJar}" />
     <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/ap_${jmolJar}"/>
     <ap_applet.jar jarfile="${packageDir}/examples/ap_${jalviewLiteJar}" />
@@ -684,6 +687,7 @@
     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
 
       <fileset dir="${packageDir}/examples">
+        <exclude name="u_*.jar"/>
         <include name="*.jar" />
       </fileset>
     </signjar>