partial implementation of JNet server prediction.

[jalview.git] / build.xml

diff --git a/build.xml b/build.xml
index c10f726..be92845 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -15,9 +15,11 @@
 
     <path id="build.classpath">
       <fileset dir="utils">
+        <include name="*.jar"/>
         <include name="**/*.jar"/>
       </fileset>
       <fileset dir="${libDir}">
+        <include name="*.jar"/>      
         <include name="**/*.jar"/>
       </fileset>
     </path>
@@ -47,13 +49,14 @@
     </delete>
   </target>
   
-  <target name="prepare" depends="clean">
+  <target name="prepare" depends="init">
     <mkdir dir="${outputDir}"/>
     <copy todir="${outputDir}">
       <fileset dir=".">
+
         <include name="${docDir}/**/*.*"/>
         <include name="${helpDir}/**/*.*"/>
-        <include name="${libDir}"/>
+        <include name="${libDir}/*.*"/>
       </fileset>
       <fileset dir="${resourceDir}">
         <include name="**/*.*"/>
@@ -61,12 +64,23 @@
     </copy>
   </target>
 
-  <target name="build" depends="init, prepare">
+  <target name="build" depends="prepare">
             <!-- not efficient yet. -->
      <javac srcdir="${sourceDir}" destdir="${outputDir}"
         classpathref="build.classpath" />
   </target>
-
+  <target name="runenv" depends="init">
+      <path id="run.classpath">
+        <pathelement location="${outputDir}"/>
+        <fileset dir="${outputDir}">
+        <include name="${libDir}/*.jar"/>
+      </fileset>
+    </path>
+    <pathconvert targetos="unix" refid="run.classpath" property="run.classpath"/>
+    
+    <echo>java -classpath ${run.classpath} jalview.bin.Jalview
+    </echo>
+</target>
   
 
   <target name="package" depends="init, build">