JAL-1152 check 'autocalculated' not 'null sequenceRef'; sort by sequence

[jalview.git] / build.xml

diff --git a/build.xml b/build.xml
index e32ae33..e9006ca 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -112,7 +112,7 @@
     <property name="packageDir" value="dist" />
     <property name="outputJar" value="jalview.jar" />
     <!-- Jalview Applet JMol Jar Dependency -->
-    <property name="jmolJar" value="JmolApplet-12.2.4.jar" />
+    <property name="jmolJar" value="JmolApplet-14.2.14_2015.06.11.jar" />
     <property name="varnaJar" value="VARNAv3-93.jar" />
     <property name="jsoup" value="jsoup-1.8.1.jar" />
     <property name="jsonSimple" value="json_simple-1.1.jar" />
@@ -189,12 +189,22 @@
     <tstamp prefix="build">
       <format property="date" pattern="dd MMMM yyyy" />
     </tstamp>
+    <exec executable="/usr/bin/git" outputproperty="git.commit"  failifexecutionfails="false">
+      <arg value="rev-parse"/>
+      <arg value="--short"/>
+      <arg value="HEAD"/>
+    </exec>
+    <exec executable="/usr/bin/git" outputproperty="git.branch" failifexecutionfails="false">
+      <arg value="rev-parse"/>
+      <arg value="--abbrev-ref"/>
+      <arg value="HEAD"/>
+    </exec>
     <properties file="${outputDir}/.build_properties">
       <header>
           ---Jalview Build Details---
         </header>      
       <property name="VERSION" value="${JALVIEW_VERSION}" />
-      <property name="INSTALLATION" value="${INSTALLATION}" />
+      <property name="INSTALLATION" value="${INSTALLATION} git-commit:${git.commit} [${git.branch}]" />
       <property name="BUILD_DATE" value="${build.date}" />
     </properties>
   </target>
@@ -547,7 +557,7 @@
   <mkdir dir="${outputDir}" />
   <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" 
                        classpathref="jalviewlite.deps" includes="jalview/appletgui/**"
-                       excludes="ext/**,MCview/**,org/**,vamsas/**,jalview/ext/paradise/**" />
+                       excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**" />
 </target>
 
 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">