JAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculation mode

[jalview.git] / examples / appletParameters.html

diff --git a/examples/appletParameters.html b/examples/appletParameters.html
index 433f5a9..277fd69 100644 (file)
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -28,7 +28,7 @@ which are described <a href="#parameters"> below</a>. Once initialised,
 the applet can be interacted with <em>via</em> its 
 <a href="javascript:doSubmit('jalviewLiteJs')">Javascript API</a>. 
 </p><p><strong>Issues arising from tightening of Java Security default settings</strong><br/>JalviewLite is provided as a signed applet with 'sandbox' permissions and wildcards that allow it to be run from any website. Unfortunately, earlier versions of Java may not be compatible with these settings. </p>
-    <p>For additional deployment notes, <a href="#appletdeploymentnotes">see below</a>.</p>
+    <p>For additional deployment notes, <a href="javascript:doSubmit('appletDeployment')">see Applet Deployment</a>.</p>
            <p><h2>Applet Parameters</h2><br/>The applet takes the following initialisation parameters.</p>
         <a name="parameters"></a>        <table width="97%" class="borderTable" align="center" >
           <tr> 
@@ -91,8 +91,9 @@ the applet can be interacted with <em>via</em> its
             <td>jnetfile</td>
             <td>fileName</td>
             <td>Secondary structure predictions from a <a
-            href="http://www.compbio.dundee.ac.uk/~www-jpred/">Jnet</a> Concise 
-              file will be added to the first sequence in the alignment.</td>
+            href="http://www.compbio.dundee.ac.uk/~www-jpred/">JPred</a> Concise 
+              file will be added to the first sequence in the alignment.<br/>
+              <em>jpredfile</em> can be used interchangeably with this parameter.</td>
           </tr>
           <tr> 
             <td>PDBfile(x)</td>