<td width="10%" valign="center"><applet
code="jalview.bin.JalviewLite" width="140" height="35"
archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
<param name="file" value="uniref50.fa">
<param name="treeFile" value="ferredoxin.nw">
<param name="userDefinedColour"
<param name="linkLabel_1" value="Uniprot">
<param name="linkUrl_1"
value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
- <param name="linkLabel_2" value="Expasy">
+ <param name="linkLabel_2" value="EMBL-EBI Search">
<param name="linkUrl_2"
- value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
+ value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
<param name="APPLICATION_URL"
value="http://www.jalview.org/services/launchApp">
</applet></td>
<td width="10%" valign="center"><applet
code="jalview.bin.JalviewLite" width="140" height="35"
archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
<param name="file" value="uniref50.fa">
<param name="features" value="exampleFeatures.txt">
<param name="showFeatureSettings" value="true">
<param name="linkLabel_1" value="Uniprot">
<param name="linkUrl_1"
value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
- <param name="linkLabel_2" value="Expasy">
- <param name="linkUrl_2"
- value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
- <param name="APPLICATION_URL"
+ <param name="linkLabel_2" value="EMBL-EBI Search">
+ <param name="linkUrl_2"
+ value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
+ <param name="APPLICATION_URL"
value="http://www.jalview.org/services/launchApp">
</applet></td>
<td valign="center">Displays a features file on the alignment</td>
<td width="10%" valign="center"><applet
code="jalview.bin.JalviewLite" width="140" height="35"
archive="jalviewApplet.jar,JmolApplet-12.2.4.jar">
+<param name="permissions" value="sandbox">
<param name="file" value="uniref50.fa">
<!-- <param name="debug" value="true">
-->
<param name="linkLabel_1" value="Uniprot">
<param name="linkUrl_1"
value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
- <param name="linkLabel_2" value="Expasy">
- <param name="linkUrl_2"
- value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
+ <param name="linkLabel_2" value="EMBL-EBI Search">
+ <param name="linkUrl_2"
+ value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
<param name="APPLICATION_URL"
value="http://www.jalview.org/services/launchApp">
<param name="PDBfile" value="1gaq.txt FER1_MAIZE">
<td width="10%" valign="middle"><applet
code="jalview.bin.JalviewLite" width="140" height="35"
archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
<param name="file" value="jpred_msa.fasta">
<param name="jnetfile" value="jpred_msa.seq.concise">
<param name="defaultColour" value="Clustal">
<param name="linkLabel_1" value="Uniprot">
<param name="linkUrl_1"
value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
- <param name="linkLabel_2" value="Expasy">
- <param name="linkUrl_2"
- value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
+ <param name="linkLabel_2" value="EMBL-EBI Search">
+ <param name="linkUrl_2"
+ value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
<param name="APPLICATION_URL"
value="http://www.jalview.org/services/launchApp">
</applet></td>
<td width="10%" valign="center"><applet
code="jalview.bin.JalviewLite" width="140" height="35"
archive="jalviewApplet.jar">
+<param name="permissions" value="sandbox">
<param name="file" value="RF00031_folded.stk">
<param name="defaultColour" value="Purine/Pyrimidine">
<param name="showAnnotation" value="true">