<tr>
<td width="100"> <applet code="jalview.bin.JalviewLite"
width="140" height="35"
- archive="jalviewApplet.jar,JmolApplet-12.2.16452.jar">
+ archive="jalviewApplet.jar,JmolApplet-12.2.4.jar">
<param name="file" value="uniref50.fa">\r <!-- <param name="debug" value="true">
-->\r <param name="defaultColour" value="Strand Propensity">
<param name="wrap" value="true">
</table></td>
</tr>
</table>
- <p> </p>
- <table width="300" border="1" cellspacing="0" cellpadding="0">
- <tr>
- <td><table width="300" border="0" cellspacing="0" cellpadding="0">
- <tr>
- <td width="100"> <applet code="jalview.bin.JalviewLite"
- width="140" height="35"
- archive="jalviewApplet.jar">
- <param name="file" value="jpred_msa.fasta">
- <param name="jnetfile" value="jpred_msa.seq.concise">
- <param name="defaultColour" value="Clustal">
- <param name="showAnnotation" value="true">
- <param name="windowHeight" value="515">
- <param name="windowWidth" value="650">
- <param name="showConservation" value="false">
- <param name="showQuality" value="false">
- <param name="showConsensus" value="false">
- <param name="showFullId" value="false">
- <param name="RGB" value="F2F2FF">
- <param name="linkLabel_1" value="SRS">
- <param name="linkUrl_1" value="http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2">
- <param name="linkLabel_2" value="Uniprot">
- <param name="linkUrl_2" value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
- <param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp">
- </applet> </td>
- <td width="165">Displays a Multiple Sequence Alignment Based
- JNet Prediction for a Sequence</td>
- </tr>
- </table></td>
- </tr>
- </table>\r </div>\r <p> </p>\r <p>For more JalviewLite examples, follow the links below.\r <ul>\r <li><a href="embedded.html">JalviewLite embedded in the web page</a></li>\r <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>\r <li><a href="linkedapplets_ng.html">use Javascript to make two jalviewLite instances talk to each other</a></li>\r <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page.</a></li>\r </ul>
+ <p> </p>\r <table width="300" border="1" cellspacing="0" cellpadding="0">\r <tr>\r <td><table width="300" border="0" cellspacing="0"\r cellpadding="0">\r <tr>\r <td width="100"><applet code="jalview.bin.JalviewLite"\r width="140" height="35" archive="jalviewApplet.jar">\r <param name="file" value="jpred_msa.fasta">\r <param name="jnetfile" value="jpred_msa.seq.concise">\r <param name="defaultColour" value="Clustal">\r <param name="showAnnotation" value="true">\r <param name="windowHeight" value="515">\r <param name="windowWidth" value="650">\r <param name="showConservation" value="false">\r <param name="showQuality" value="false">\r <param name="showConsensus" value="false">\r <param name="showFullId" value="false">\r <param name="RGB" value="F2F2FF">\r <param name="linkLabel_1" value="SRS">\r <param name="linkUrl_1"\r value="http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2">\r <param name="linkLabel_2" value="Uniprot">\r <param name="linkUrl_2"\r value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">\r <param name="APPLICATION_URL"\r value="http://www.jalview.org/services/launchApp">\r </applet></td>\r <td width="165">Displays a Multiple Sequence Alignment\r Based JNet Prediction for a Sequence</td>\r </tr>\r </table></td>\r </tr>\r </table>\r <p> </p>\r <table width="300" border="1" cellspacing="0" cellpadding="0">\r <tr>\r <td><table width="300" border="0" cellspacing="0" cellpadding="0">\r <tr>\r <td width="100"> <applet code="jalview.bin.JalviewLite"\r width="140" height="35"\r archive="jalviewApplet.jar">\r <param name="file" value="RF00031_folded.stk">\r <param name="defaultColour" value="Purine/Pyrimidine">\r <param name="showAnnotation" value="true">\r <param name="windowHeight" value="515">\r <param name="windowWidth" value="650">\r <param name="showConservation" value="false">\r <param name="showQuality" value="false">\r <param name="showConsensus" value="true">\r <param name="showFullId" value="false">\r <param name="RGB" value="F2F2FF">\r <param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp">\r </applet> </td>\r <td width="165">Displays an RFAM RNA fold family with secondary structure annotation</td>\r </tr>\r </table></td>\r </tr>\r </table>\r </div>\r <p> </p>\r <p>For more JalviewLite examples, follow the links below.\r <ul>\r <li><a href="embedded.html">JalviewLite embedded in the web page</a></li>\r <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>\r <li><a href="linkedapplets_ng.html">use Javascript to make two jalviewLite instances talk to each other</a></li>\r <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page.</a></li>\r </ul>
<!-- InstanceEndEditable --></td>\r </tr>\r </table>\r</div>\r</body>\r<!-- InstanceEnd --></html>\r
\ No newline at end of file