JAL-1422 remove SRS and expasy links and replace with EMBL-EBI Search and Uniprot...

[jalview.git] / examples / applets.html

diff --git a/examples/applets.html b/examples/applets.html
index 8862db0..e88742e 100755 (executable)
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -186,9 +186,9 @@ document.onclick = mclose;
           <param name="linkLabel_1" value="Uniprot">
            <param name="linkUrl_1"
             value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
-            <param name="linkLabel_2" value="Expasy">
+            <param name="linkLabel_2" value="EMBL-EBI Search">
              <param name="linkUrl_2"
-              value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
+              value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
        <param name="APPLICATION_URL"
         value="http://www.jalview.org/services/launchApp">
        </applet></td>
@@ -211,10 +211,10 @@ document.onclick = mclose;
        <param name="linkLabel_1" value="Uniprot">
         <param name="linkUrl_1"
          value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
-         <param name="linkLabel_2" value="Expasy">
-          <param name="linkUrl_2"
-           value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
-           <param name="APPLICATION_URL"
+                     <param name="linkLabel_2" value="EMBL-EBI Search">
+             <param name="linkUrl_2"
+              value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
+        <param name="APPLICATION_URL"
             value="http://www.jalview.org/services/launchApp">
        </applet></td>
       <td valign="center">Displays a features file on the alignment</td>
@@ -235,9 +235,9 @@ document.onclick = mclose;
        <param name="linkLabel_1" value="Uniprot">
         <param name="linkUrl_1"
          value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
-         <param name="linkLabel_2" value="Expasy">
-          <param name="linkUrl_2"
-           value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
+            <param name="linkLabel_2" value="EMBL-EBI Search">
+             <param name="linkUrl_2"
+              value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
        <param name="APPLICATION_URL"
         value="http://www.jalview.org/services/launchApp">
         <param name="PDBfile" value="1gaq.txt FER1_MAIZE">
@@ -262,9 +262,9 @@ document.onclick = mclose;
        <param name="linkLabel_1" value="Uniprot">
         <param name="linkUrl_1"
          value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$">
-         <param name="linkLabel_2" value="Expasy">
-          <param name="linkUrl_2"
-           value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
+            <param name="linkLabel_2" value="EMBL-EBI Search">
+             <param name="linkUrl_2"
+              value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$">
        <param name="APPLICATION_URL"
         value="http://www.jalview.org/services/launchApp">
        </applet></td>
@@ -273,7 +273,7 @@ document.onclick = mclose;
      </tr>
     </table>
     <p>
-    <h2>RF00031 RFAM Alignment with per seqeunce secondary
+    <h2>RF00031 RFAM Alignment with per sequence secondary
      structure</h2>
     </p>
     <table width="90%">
@@ -301,9 +301,9 @@ document.onclick = mclose;
   </div>
  </div>
 
- <div id ="footer">
+<div id ="footer">
 <div id="innerFooter">
-<div id="copyright"><p>Copyright all rights reserved 2012</p></div>
+<div id="copyright"><p>Published under <a href="http://creativecommons.org/licenses/by-sa/3.0/">CC-SA 3.0</a></p></div>
 <div id="cite">
 <p>
 If you use Jalview in your work, please cite this publication:
@@ -312,7 +312,7 @@ If you use Jalview in your work, please cite this publication:
 <p>
 Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
 "Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
-Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033
+Bioinformatics 25 (9) 1189-1191 <a href="http://dx.doi.org/10.1093/bioinformatics/btp033">doi: 10.1093/bioinformatics/btp033</a>
 </p>
 </div>
 </div>