JAL-4356 release date for 2.11.3.3 is 22nd May 2025

[jalview.git] / examples / groovy / PIDmatrix.groovy

diff --git a/examples/groovy/PIDmatrix.groovy b/examples/groovy/PIDmatrix.groovy
index 3ff4b39..76b9de7 100644 (file)
--- a/examples/groovy/PIDmatrix.groovy
+++ b/examples/groovy/PIDmatrix.groovy
@@ -56,13 +56,13 @@ printSimilarityMatrix(true,true,SimilarityParams.Jalview)
 
 void printSimilarityMatrix(boolean selview=false, boolean includeids=true, SimilarityParams pidMethod) {
 
-  def currentAlignFrame = jalview.bin.Jalview.getCurrentAlignFrame()
+  def currentAlignFrame = Jalview.getCurrentAlignFrame()
 
   jalview.gui.AlignViewport av = currentAlignFrame.getCurrentView()
 
   jalview.datamodel.AlignmentView seqStrings = av.getAlignmentView(selview)
 
-  if (!selview) {
+  if (!selview || av.getSelectionGroup()==null) {
     start = 0
     end = av.getAlignment().getWidth()
     seqs = av.getAlignment().getSequencesArray()