writeAnnot = {
- new File(it).append(new jalview.io.AnnotationFile().printAnnotations(Jalview.getAlignframes()[0].getViewport().getAlignment().getAlignmentAnnotation(),null,null))
+ new File(it).append(new jalview.io.AnnotationFile().printAnnotations(Jalview.getAlignFrames()[0].getViewport().getAlignment().getAlignmentAnnotation(),null,null))
}