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<li><a href="appletParameters.html">Applet Parameters</a></li>
<li class="jvlite-nav-small"><a href="jalviewLiteJs.html">Javascript API</a></li>
<li><a href="formComplete.html">in-page API demo</a></li>
-<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
-<li><a href="embeddedWJmol.html">Sequence And Structure demo</a></li>
+<li><a href="linkedapplets_ng.html">Two JalviewLites demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
</ul>
</div>
<div id="content" class="content">
<p>The jalviewLite applet's application programming interface (API) includes two components. A <a href="javascript/jalview.js">JalviewLite Javascript Library</a> and the <a href="#api">public methods on the JalviewLite applet</a>.
</p>
- <p>The best way to learn how to use the API is to see it in action on the demonstration pages below:</p>
- <ul>
- <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>
- <li><a href="linkedapplets_ng.html">use Javascript to make two jalviewLite instances talk to each other.</a></li>
- <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page (EXPERIMENTAL! please provide feedback!).</a></li>
- <li><a href="javascriptLaunch.html">launch JalviewLite from a javascript button</a></li>
- </ul>
<h3>Notes</h3>
<ul>
<li>Unfortunately Javascript - Java communication is not possible
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<div id="cite">
<p>
If you use Jalview in your work, please cite this publication:
<p>
Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
"Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
-Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033
+Bioinformatics 25 (9) 1189-1191 <a href="http://dx.doi.org/10.1093/bioinformatics/btp033">doi: 10.1093/bioinformatics/btp033</a>
</p>
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git://source.jalview.org / jalview.git / blobdiff