public String getAlignmentFrom(AlignFrame alf, String format, String suffix)
// add the given features or annotation to the current alignment
+// if features are loaded, feature display is automatically enabled
public void loadAnnotation(String annotation)
// add the given features or annotation to the given alignment view
+// if features are loaded, feature display is automatically enabled
public void loadAnnotationFrom(AlignFrame alf, String annotation)
+// parse the given string as a jalview or GFF features file and optionally enable feature display on the current alignment
+// (v2.7.1)
+public abstract void loadFeatures(String features, boolean autoenabledisplay)
+
+// parse the given string as a jalview or GFF features file and optionally enable feature display on the given alignment
+// (v2.7.1)
+public abstract void loadFeaturesFrom(AlignFrame alf, String features, boolean autoenabledisplay)
+
// get the sequence features in the given format (Jalview or GFF)
public String getFeatures(String format)