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[jalview.git] / examples / javascriptLaunch.html
diff --git a/examples/javascriptLaunch.html b/examples/javascriptLaunch.html
index 2a0e1c6..7dbf8e0 100644 (file)
--- a/examples/javascriptLaunch.html
+++ b/examples/javascriptLaunch.html
@@ -1,4 +1,4 @@
-<html>
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> 
 <!--
  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
  * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
@@ -16,9 +16,143 @@
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 -->
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
   <head><title>Opening JalviewLite from Javascript</title>
+  <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" /> 
+  
+ <link href="css/reset.css" rel="stylesheet" type="text/css" />
+ <link href="css/style.css" rel="stylesheet" type="text/css" />
+ 
+  <!--[if IE 6]>
+ <link rel="stylesheet" type="text/css" href="css/ie6.css" />
+<![endif]-->
+
+<!--[if IE 7]>
+ <link rel="stylesheet" type="text/css" href="css/ie7.css" />
+<![endif]-->
+
+<!-- dd menu -->
+<script type="text/javascript">
+<!--
+var timeout         = 500;
+var closetimer  = 0;
+var ddmenuitem      = 0;
+
+// open hidden layer
+function mopen(id)
+{ 
+ // cancel close timer
+ mcancelclosetime();
+
+ // close old layer
+ if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
+
+ // get new layer and show it
+ ddmenuitem = document.getElementById(id);
+ ddmenuitem.style.visibility = 'visible';
+
+}
+// close showed layer
+function mclose()
+{
+ if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
+}
+
+// go close timer
+function mclosetime()
+{
+ closetimer = window.setTimeout(mclose, timeout);
+}
+
+// cancel close timer
+function mcancelclosetime()
+{
+ if(closetimer)
+ {
+  window.clearTimeout(closetimer);
+  closetimer = null;
+ }
+}
+
+// close layer when click-out
+document.onclick = mclose; 
+// -->
+</script>
+
 </head>
-  <body>
+
+
+<body>
+
+
+<div id="header">
+<div id="logo"><a href="/" title="Home"></a></div>
+<ul id="buttons">
+<li id="applet"><a href="applets.html" title="applet"></a></li>
+<li id="desktop"><a href="/webstart/jalview.jnlp" title="desktop"></a></li>
+</ul>
+</div>
+
+
+<div id ="nav">
+<div id="navInner">
+
+<ul id="sddm">
+ <li><a href="#">Home</a></li>
+ <li><a href="#" onmouseover="mopen('m1')" onmouseout="mclosetime()">About</a>
+  <div id="m1" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
+  <a href="#">Documentation</a>
+  <a href="#">Publications</a>
+  <a href="#">Credits</a>
+  <a href="#">Screenshots</a>
+  </div>
+ </li>
+ <li><a href="#">FAQ</a></li>
+ <li><a href="#" onmouseover="mopen('m3')" onmouseout="mclosetime()" class="community">Community</a>
+  <div id="m3" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
+  <a href="#">News Mailing List</a>
+  <a href="#">Discussion Mailing List</a>
+  <a href="#">Links</a>
+  <a href="#">Community News</a>
+  </div>
+ </li>
+ <li><a href="#" onmouseover="mopen('m4')" onmouseout="mclosetime()" class="development">Development</a>
+  <div id="m4" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
+  <a href="#">Release History</a>
+  <a href="#">Jalview Bug Tracker</a>
+  <a href="#">Jalview Git Web</a>
+  <a href="#">Development News</a>
+  </div>
+ </li>
+ <li><a href="#" onmouseover="mopen('m5')" onmouseout="mclosetime()" class="training">Training</a>
+  <div id="m5" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
+  <a href="#">Training Courses</a>
+  <a href="#">Training News</a>
+  </div>
+ </li>
+ <li><a href="#" class="download-right">Download</a></li>
+</ul>
+<div style="clear:both"></div>
+</div>
+
+</div>
+
+
+<div id="pageWrap">
+
+<div id="sideNav">
+<ul>
+<li><a href="applets.html">JalviewLite Examples</a></li>
+<li><a href="appletParameters.html">Applet Parameters</a></li>
+<li><a href="jalviewLiteJs.html">Javascript API</a><ul><li class="jvlite-nav-small"><a href="javascriptLaunch.html">JalviewLite Button</a></li></ul></li>
+<li><a href="formComplete.html">in-page API demo</a></li>
+<li><a href="linkedApplets_ng.html">Two JalviewLites demo</a></li>
+<li><a href="embeddedWJmol.html">Jalview and Jmol demo</a></li>
+</ul>
+</div>
+
+<div id="content" class="content"> 
   <SCRIPT type="text/javascript">
   /* <![CDATA[ // */
 // From http://snipplr.com/view.php?codeview&id=1272
@@ -115,5 +249,37 @@ onClick="startJalview('plantfdx.fa','Button1.alignment','alwvar')"/>
   </form>
   
 
-  </body>
-</html>
+</div>
+</div>
+<div id ="footer">
+<div id="innerFooter">
+<div id="copyright"><p>Published under <a href="http://creativecommons.org/licenses/by-sa/3.0/">CC-SA 3.0</a></p></div>
+<div id="cite">
+<p>
+If you use Jalview in your work, please cite this publication:
+</p>
+<br />
+<p>
+Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
+"Jalview Version 2 - a multiple sequence alignment editor and analysis workbench"
+Bioinformatics 25 (9) 1189-1191 <a href="http://dx.doi.org/10.1093/bioinformatics/btp033">doi: 10.1093/bioinformatics/btp033</a>
+</p>
+</div>
+</div>
+</div>
+
+<script type="text/javascript">
+    var gaJsHost = (("https:" == document.location.protocol) ?
+ "https://ssl." : "http://www.");
+    document.write(unescape("%3Cscript src=\'" + gaJsHost +
+ "google-analytics.com/ga.js\' type=\'text/javascript\'%3E%3C/script%3E"));
+</script>
+<script type="text/javascript">
+try{
+    var pageTracker = _gat._getTracker("'UA-9060947-1'");
+    pageTracker._trackPageview();
+} catch(err) {}
+</script>
+</body>
+</head>
+</html>
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