in progress

[jalview.git] / forester / aptx / aptx_configuration_files / _aptx_configuration_file

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
index a384a57..47e84d0 100644 (file)
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
@@ -163,7 +163,6 @@ font_size_min:                             2
 font_size_max:                             20
 antialias_screen:                          yes
 show_scale:                                yes
-show_branch_length_values:                 no
 cladogram_type:                            ext_node_sum_dep
 phylogeny_graphics_type:                   rectangular
 node_label_direction:                      horizontal
@@ -182,6 +181,8 @@ overview_placement_type:                   upper_left
 color_labels_same_as_branch_length_values: no
 display_sequence_relations:                no
 show_domain_labels:                        yes
+line_up_renderable_data:                   no
+right_align_domain_architectures:          no
 show_seq_annotation_ref_sources:           yes
 branch_length_value_digits:                3
 confidence_value_digits:                   3
@@ -225,10 +226,12 @@ show_taxonomy_common_names:     display   no
 show_taxonomy_images:           display   no
 show_annotations:               display   no
 write_confidence_values:        display   ?
+write_branch_length_values:     display   no
 write_events:                   display   ?
 use_visual_styles:              display   no
 width_branches:                 display   no
 show_domain_architectures:      display   no
+show_msa:                       display   no
 show_binary_characters:         display   no
 show_binary_character_counts:   display   no
 display_internal_data:          display   yes