in progress

[jalview.git] / forester / aptx / aptx_configuration_files / _aptx_configuration_file

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
index 0ee4c23..61546d9 100644 (file)
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
@@ -69,13 +69,22 @@ native_ui: ?
 #     Possible values: solid
 #                      gradient
 #                      none
-#  To determine what data field to return by clicking on "return external descendents data":
-#     'ext_descendents_data_to_return'
+#
+#  To determine what data field to return by clicking on "Return ...": 'ext_descendents_data_to_return'
 #     Possible values: node_name
 #                      sequence_name
 #                      sequence_acc
 #                      sequence_mol_seq
 #                      sequence_symbol
+#                      taxonomy_scientific_name
+#                      taxonomy_code
+#                      user_selected
+#  To determine where to return data by clicking on "Return ...": 'ext_descendents_data_to_return_on'
+#     Possible values: window
+#                      console
+#  To override label for menu item to return data of external nodes (default ""Return ..."): 'label_for_get_ext_descendents_data'
+#     Example: 'label_for_get_ext_descendents_data: Get_Node_Data'
+# 
 #  Taxonomy colorization of nodes (shapes) instead of labels: 'taxonomy_colorize_node_shapes': values: 'yes'/'no'
 #  Do/not color labels same as branch length values: 'color_labels_same_as_branch_length_values': values: 'yes'/'no'
 #  Do/not show domain labels: 'show_domain_labels': values: 'yes'/'no'
@@ -126,7 +135,10 @@ allow_editing:                             yes
 internal_labels_are_confidence_values:     no
 replace_underscores_in_nh_parsing:         no
 extract_taxonomy_codes_in_nh_parsing:      yes
-ext_descendents_data_to_return:            sequence_name
+ext_descendents_data_to_return_on:         window
+ext_descendents_data_to_return:            user_selected
+#label_for_get_ext_descendents_data:        Get_Node_Data         
+
 
 
 #  phyloXML parsing
@@ -142,6 +154,7 @@ ext_descendents_data_to_return:            sequence_name
 validate_against_phyloxml_xsd_schema: true
 
 
+
 #  Checkbox Display Selection
 #  --------------------------
 #  This is used to select which checkboxes to display
@@ -181,6 +194,7 @@ show_properties:                display   no
 show_vector_data:               display   no
 
 
+
 #  Combo-box Display Selection
 #  ---------------------------
 #  Format: 'name: display/nodisplay'
@@ -206,6 +220,7 @@ click_to: get_ext_descendents_data display
 default_click_to: display_node_data
 
 
+
 #  Default Tree Display Colors
 #  ---------------------------
 
@@ -245,6 +260,7 @@ gui_menu_text_color:                  0xFFFFFF
 gui_button_border_color:              0x000000
 
 
+
 #  Domain Structure Display Colors
 #  -------------------------------
 domain_structure_base_color:          0x202020