in progress

[jalview.git] / forester / aptx / aptx_configuration_files / _aptx_configuration_file

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
index e700302..61546d9 100644 (file)
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
@@ -78,6 +78,7 @@ native_ui: ?
 #                      sequence_symbol
 #                      taxonomy_scientific_name
 #                      taxonomy_code
+#                      user_selected
 #  To determine where to return data by clicking on "Return ...": 'ext_descendents_data_to_return_on'
 #     Possible values: window
 #                      console
@@ -135,10 +136,11 @@ internal_labels_are_confidence_values:     no
 replace_underscores_in_nh_parsing:         no
 extract_taxonomy_codes_in_nh_parsing:      yes
 ext_descendents_data_to_return_on:         window
-ext_descendents_data_to_return:            node_name
+ext_descendents_data_to_return:            user_selected
 #label_for_get_ext_descendents_data:        Get_Node_Data         
 
 
+
 #  phyloXML parsing
 #  ----------------
 #  To ensure compatibility with all current and future 
@@ -152,6 +154,7 @@ ext_descendents_data_to_return:            node_name
 validate_against_phyloxml_xsd_schema: true
 
 
+
 #  Checkbox Display Selection
 #  --------------------------
 #  This is used to select which checkboxes to display
@@ -191,6 +194,7 @@ show_properties:                display   no
 show_vector_data:               display   no
 
 
+
 #  Combo-box Display Selection
 #  ---------------------------
 #  Format: 'name: display/nodisplay'
@@ -216,6 +220,7 @@ click_to: get_ext_descendents_data display
 default_click_to: display_node_data
 
 
+
 #  Default Tree Display Colors
 #  ---------------------------
 
@@ -255,6 +260,7 @@ gui_menu_text_color:                  0xFFFFFF
 gui_button_border_color:              0x000000
 
 
+
 #  Domain Structure Display Colors
 #  -------------------------------
 domain_structure_base_color:          0x202020