fixed issue with cutting off of long names in pdf export + minor changes

[jalview.git] / forester / aptx / aptx_configuration_files / _aptx_configuration_file

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
index 1ffa5d8..8236aa2 100644 (file)
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
@@ -17,11 +17,11 @@ native_ui: ?
 #     value for bootstrap support)
 #
 #  Font family name: 'font_family':
-#     Example: 'font_family: Sans,Helvetica'
+#     Example: 'font_family: Arial_Unicode_MS,Dialog,SansSerif,Sans,Arial,Helvetica'
 #     It is advisable to use more than one value for font_family (in
 #     decreasing order of preference). Font family names have to be
 #     comma separated (no spaces). Spaces in font names have to be
-#     replaced by underscores (e.g. 'Times_New_Roman').
+#     replaced by underscores (e.g. 'Arial_Unicode_MS').
 #
 #  Font size: 'font_size':
 #     Example: 'font_size: 10'
@@ -40,15 +40,6 @@ native_ui: ?
 #                                    ext_node_sum_dep
 #                                    total_node_sum_dep (for "uniform" branch lengths)
 #
-#  Default size for graphics export and printing: 'graphics_export_x' and 'graphics_export_y':
-#     (Archaeopteryx tries to guess the locale, so setting these is not always necessary)
-#     Example: For A4 (portrait):
-#               'graphics_export_x: 595'
-#               'graphics_export_y: 845'
-#             For US Letter (portrait):
-#               'graphics_export_x: 612'
-#               'graphics_export_y: 792'
-#
 #  Default line width for PDF export: 'pdf_export_line_wdith':
 #     Example: 'pdf_export_line_width: 0.5'
 #
@@ -162,7 +153,7 @@ native_ui: ?
 
 
 min_confidence_value:                      0.0
-font_family:                               SansSerif,Sans-serif,Sans,Dialog,Tahoma,Helvetica,Arial,Verdana
+font_family:                               Arial_Unicode_MS,Dialog,SansSerif,Sans,Arial,Helvetica
 font_size:                                 10
 font_size_min:                             2
 font_size_max:                             20
@@ -177,8 +168,6 @@ show_node_shapes_for_nodes_with_vis_data:  yes
 default_node_size:                         4
 default_node_shape:                        rectangle
 default_node_fill:                         solid
-#graphics_export_x:                         595
-#graphics_export_y:                         792
 pdf_export_line_width:                     0.5
 show_overview:                             yes
 overview_width:                            120