in progress

[jalview.git] / forester / aptx / aptx_configuration_files / _aptx_configuration_file_1

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1 b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
index a2ee8bf..075f547 100644 (file)
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
@@ -146,7 +146,7 @@ show_domain_labels:                        yes
 line_up_renderable_data:                   no
 right_align_domain_architectures:          no
 branch_length_value_digits:                3
-confidence_value_digits:                   3
+confidence_value_digits:                   2
 background_gradient:                       no
 allow_editing:                             yes
 ext_descendents_data_to_return_on:         window
@@ -321,7 +321,6 @@ species_color: CIOSA        0xFF2CAE
 species_color: BOVIN        0x5C3317
 species_color: CANFA        0x8B2323
 species_color: HUMAN        0xFF2400
-species_color: Homo_sapiens 0xFF2400
 species_color: PANTR        0xCC2400
 species_color: MOUSE        0xFF7F00
 species_color: RAT          0xFFEF00
@@ -336,21 +335,23 @@ species_color: DANRE        0x0000BB
 species_color: TETNG        0x0000AA
 species_color: ORYLA        0x000088
 species_color: GASAC        0x000066
-species_color: CAEEL        0xA0A0A0
+species_color: CAEEL        0x666699
 species_color: CAEBR        0xB0B0B0
-species_color: DROME        0x706F00
-species_color: DROPS        0x504F00
+species_color: DROME        0x663366
+species_color: DROPS        0x996699
 species_color: APIME        0x7A7700
 species_color: AEDAE        0x8C5900
 species_color: TRICA        0x918E00
-species_color: NEMVE        0xAABADD
-species_color: HYDAT        0x7C9BCF
+species_color: NEMVE        0x0066CC
+species_color: HYDAT        0x3399FF
+species_color: HYDVU        0x3399FF
 species_color: LUBBA        0xF7B5CB
 species_color: GEOCY        0xF5A0BD
+species_color: AMPQE        0x009966
 species_color: SUBDO        0xC790B9
 species_color: MONBE        0xFC0FC0
-species_color: DICPU        0x23238E
-species_color: DICDI        0x4D4DFF
+species_color: DICPU        0xFFCC33
+species_color: DICDI        0xFFCC00
 species_color: ENTHI        0x5959AB
 species_color: ARATH        0x00FF00
 species_color: POPTR        0x006400
@@ -385,7 +386,7 @@ species_color: mammals        0xFF0000
 species_color: Chordata       0x8470FF
 species_color: Echinodermata  0x6495ED
 species_color: Hemichordata   0x7EC0EE
-species_color: Arthropoda     0x7AC5CD 
+species_color: Arthropoda     0x7AC5CD
 species_color: Nematoda       0x7171C6
 species_color: Tardigrada     0x388E8E
 species_color: Annelida       0xC67171