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[jalview.git] / forester / aptx / aptx_example_files / seq_colors_with_species_and_annotations.xml

diff --git a/forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml b/forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml
index 32ed2fe..079e5c0 100644 (file)
--- a/forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml
+++ b/forester/aptx/aptx_example_files/seq_colors_with_species_and_annotations.xml
@@ -20,7 +20,7 @@
           </taxonomy>\r
           <sequence>\r
             <name>Tubulin-alpha</name>\r
-            <annotation ref="subtree:A"></annotation>\r
+            <annotation ref="subtree:one"></annotation>\r
           </sequence>\r
         </clade>\r
         <clade>\r
@@ -36,7 +36,7 @@
           </taxonomy>\r
           <sequence>\r
             <name>Tubulin-beta</name>\r
-            <annotation ref="subtree:A"></annotation>\r
+            <annotation ref="subtree:one"></annotation>\r
           </sequence>\r
         </clade>\r
       </clade>\r
@@ -55,7 +55,7 @@
           </taxonomy>\r
           <sequence>\r
             <name>Tubulin-beta</name>\r
-            <annotation ref="subtree:A"></annotation>\r
+            <annotation ref="subtree:one"></annotation>\r
           </sequence>\r
         </clade>\r
         <clade>\r
@@ -73,7 +73,7 @@
             </taxonomy>\r
             <sequence>\r
               <name>Tubulin-alpha</name>\r
-              <annotation ref="subtree:A"></annotation>\r
+              <annotation ref="subtree:one"></annotation>\r
             </sequence>\r
           </clade>\r
           <clade>\r
@@ -89,7 +89,7 @@
             </taxonomy>\r
             <sequence>\r
               <name>Tubulin-alpha</name>\r
-              <annotation ref="subtree:A"></annotation>\r
+              <annotation ref="subtree:one"></annotation>\r
             </sequence>\r
           </clade>\r
         </clade>\r
@@ -110,7 +110,7 @@
           </taxonomy>\r
           <sequence>\r
             <name>Tubulin-alpha</name>\r
-            <annotation ref="subtree:B"></annotation>\r
+            <annotation ref="subtree:two"></annotation>\r
           </sequence>\r
         </clade>\r
         <clade>\r
@@ -128,7 +128,7 @@
             </taxonomy>\r
             <sequence>\r
               <name>Tubulin-alpha</name>\r
-              <annotation ref="subtree:B"></annotation>\r
+              <annotation ref="subtree:two"></annotation>\r
             </sequence>\r
           </clade>\r
           <clade>\r
@@ -144,7 +144,7 @@
             </taxonomy>\r
             <sequence>\r
               <name>Tubulin-alpha</name>\r
-              <annotation ref="subtree:B"></annotation>\r
+              <annotation ref="subtree:two"></annotation>\r
             </sequence>\r
           </clade>\r
         </clade>\r
@@ -166,7 +166,7 @@
             </taxonomy>\r
             <sequence>\r
               <name>Tubulin-alpha</name>\r
-              <annotation ref="subtree:B"></annotation>\r
+              <annotation ref="subtree:two"></annotation>\r
             </sequence>\r
           </clade>\r
           <clade>\r
@@ -182,7 +182,7 @@
             </taxonomy>\r
             <sequence>\r
               <name>Tubulin-beta</name>\r
-              <annotation ref="subtree:B"></annotation>\r
+              <annotation ref="subtree:two"></annotation>\r
             </sequence>\r
           </clade>\r
         </clade>\r
@@ -201,7 +201,7 @@
             </taxonomy>\r
             <sequence>\r
               <name>Tubulin-beta</name>\r
-              <annotation ref="subtree:B"></annotation>\r
+              <annotation ref="subtree:two"></annotation>\r
             </sequence>\r
           </clade>\r
           <clade>\r
@@ -219,7 +219,7 @@
               </taxonomy>\r
               <sequence>\r
                 <name>Tubulin-delta</name>\r
-                <annotation ref="subtree:B"></annotation>\r
+                <annotation ref="subtree:two"></annotation>\r
               </sequence>\r
             </clade>\r
             <clade>\r
@@ -235,7 +235,7 @@
               </taxonomy>\r
               <sequence>\r
                 <name>Tubulin-delta</name>\r
-                <annotation ref="subtree:B"></annotation>\r
+                <annotation ref="subtree:two"></annotation>\r
               </sequence>\r
             </clade>\r
           </clade>\r