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[jalview.git] / forester / data / surfacing / genome_locations.txt
index ffb74c5..9faab1d 100644 (file)
-TRIAD  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Triad1_best_proteins.fasta
-NEMVE  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Nemve1FilteredModels1.fasta
-CAP    /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/CAP_FilteredModelsv1.0.aa.fasta
-HELRO  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Helro1_FilteredModels3.fasta
-LOTGI  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Lotgi1_GeneModels_FilteredModels1_aa.fasta
-CAEBR  /home/czmasek/DATA/SEQUENCES/GENOMES/SANGER/brigpep2.pep
-CAEEL  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Caenorhabditis_elegans.WB170.45.pep.all.fa
-SCHMA  /home/czmasek/DATA/SEQUENCES/GENOMES/TIGR/Smansoni_preliminary_annotation.pep
-DAPPU  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/DAPPU_FrozenGeneCatalog_2007_07_03.aa.fasta
-ANOGA  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Anopheles_gambiae.AgamP3.45.pep.all.fa
-CULPI  /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/culex_pipiens_3_proteins.fasta
-AEDAE  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Aedes_aegypti.AaegL1.45.pep.all.fa
-DROPS  /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/drops_freeze01_genscan.pep.fa
-DROME  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Drosophila_melanogaster.BDGP4.3.45.pep.all.fa
-APIME  /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/Amel_release1_OGS_pep.fa
-NASVI  /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/NASVI_protein.fa
-BOMMO  /home/czmasek/DATA/SEQUENCES/GENOMES/BGI/SW_ge2k_BGF.pep
-TRICA  /home/czmasek/DATA/SEQUENCES/GENOMES/BEETLEBASE/beetlebase-v2-fgenesh-predicted-proteins.fa
-STRPU  /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/STRPU_GLEAN3.fa
-OIKDI  /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/Oikopleura_dioica.SNAP.Od.fasta
-CIOIN  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Ciona_intestinalis.JGI2.45.pep.all.fa
-CIOSA  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Ciona_savignyi.CSAV2.0.45.pep.all.fa
-BRAFL  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Brafl1.fasta
-ORYLA  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Oryzias_latipes.MEDAKA1.45.pep.all.fa
-GASAC  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Gasterosteus_aculeatus.BROADS1.45.pep.all.fa
-DANRE  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Danio_rerio.ZFISH6.45.pep.all.fa
-FUGRU  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Takifugu_rubripes.FUGU4.45.pep.all.fa
-TETNG  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Tetraodon_nigroviridis.TETRAODON7.45.pep.all.fa
-XENTR  /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/proteins.Xentr4.fasta
-CHICK  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Gallus_gallus.WASHUC2.45.pep.all.fa
-ORNAN  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Ornithorhynchus_anatinus.OANA5.46.pep.all.fa
-MOUSE  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Mus_musculus.NCBIM36.45.pep.all.fa
-HUMAN  /home/czmasek/DATA/SEQUENCES/GENOMES/METAZOAN/Homo_sapiens.NCBI36.50.pep.all.fa
-PANTR  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Pan_troglodytes.CHIMP2.1.46.pep.all.fa
-RAT    /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Rattus_norvegicus.RGSC3.4.46.pep.all.fa
-MONDO  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_46/Monodelphis_domestica.BROADO5.46.pep.all.fa
-CANFA  /home/czmasek/DATA/SEQUENCES/GENOMES/ENSEMBL/REL_45/Canis_familiaris.BROADD2.45.pep.all.fa
-MONBE  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Monbr1_best_proteins.fasta
-PHYBL  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Phybl1_best_proteins.fasta
-RHIOR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/rhizopus_oryzae_3_proteins.fasta
-SCHJP  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/schizosaccharomyces_japonicus_1_proteins.fasta
-SCHPO  /home/czmasek/DATA/SEQUENCES/GENOMES/SANGER/pompep.fasta
-SCHOT  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/schizosaccharomyces_octosporus_yfs286_2.fasta
-ASHGO  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/982.A_gossypii.fasta
-CANAL  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/candida_albicans_wo1_1_proteins.fasta
-CANGA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Cagl-GL2r2.aa
-CANTR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CANTR_candida_tropicalis_3_proteins.fasta
-CLALS  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CLALS_candida_lusitaniae_1_proteins.fasta
-DEBHA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Deha-GL2r1.aa
-KLULA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Klla-GL2r2.aa
-KLUWA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/KLUWA_kluyveromyces_waltii.SNAP.aa
-LODEL  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/lodderomyces_elongisporus_1_proteins.fasta
-PICGU  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/PICGU_candida_guilliermondii_1_proteins.fasta
-PICST  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/PICST_FM1.aa.fasta
-YEAST  /home/czmasek/DATA/SEQUENCES/GENOMES/STANFORD/yeast_nrpep.fasta
-SACCR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACCR_saccharomyces_cerevisiae_rm11-1a_1_proteins.fasta
-SACPA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACPA_orf_trans.fasta
-SACBA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACBA_orf_trans.fasta
-SACCA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACCA_orf_trans.fasta
-SACMI  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SACMI_orf_trans.fasta
-YARLI  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Yali-GL2r2.aa
-ASPCL  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPCL_1_proteins.fasta
-ASPFL  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPFL_2_proteins.fasta
-ASPFU  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_fumigatus_proteins.fasta
-ASPNG  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Aspni1_FilteredModels1.aa.fasta
-ASPOR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ASPOR_1_proteins.fasta
-ASPTE  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_terreus_1_proteins.fasta
-COCIM  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/COCIM_rs_2_proteins.fasta
-NEOFI  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/NEOFI_proteins.fasta
-EMENI  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/aspergillus_nidulans_1_proteins.fasta
-AJECA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/AJECA_histoplasma_capsulatum_1_proteins.fasta
-UNCRE  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/UNCRE_uncinocarpus_reesii_2_proteins.fasta
-PARBR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/paracoccidioides_brasiliensis_pb03_1_proteins.fasta
-BOTFB  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/BOTFB_botrytis_cinerea_1_proteins.fasta
-SCLSC  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/SCLSC_sclerotinia_sclerotiorum_1_proteins.fasta
-CHAGB  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/chaetomium_globosum_1_proteins.fasta
-FUSOX  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/fusarium_oxysporum_f._sp._lycopersici_2_proteins.fasta
-GIBMO  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/GIBMO_fusarium_verticillioides_3_proteins.fasta
-GIBZE  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/fusarium_graminearum_3_proteins.fasta
-MAGGR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/magnaporthe_grisea_5_proteins.fasta
-FUSSH  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Necha2_best_proteins.fasta
-NEUCR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/neurospora_crassa_7_proteins.fasta
-PODAN  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/cds_podo_v1
-TRIRE  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/TRIRE_proteins.FilteredModelsV2.0.fasta
-TRIVE  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/TRIVE_proteins.FM3.fasta
-TRIAT  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Tatroviride.FilteredModels4.aa.fasta
-CRYPA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Cparasitica.FilteredModels.aa.fasta
-PHANO  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/stagonospora_nodorum_1_proteins.fasta
-MYCFI  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/MYCFI_FilteredModelsv1.0.aa.fasta
-MYCGR  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/MYCGR_proteins.FilteredModels1.fasta
-PYRTR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/pyrenophora_tritici-repentis_1_proteins.fasta
-COCHE  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/CocheC5_1_GeneModels_FilteredModels1_aa.fasta
-COPCI  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/coprinus_cinereus_1_proteins.fasta
-CRYNE  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/cryptococcus_neoformans_1_proteins.fasta
-LACBI  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/LACBI_BestModelsv1.aa.fasta
-PHACH  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/PHACH_BestModels2.1.prot
-POSPL  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Pospl1_FilteredModels2_proteins.fasta
-SPORO  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Sroseus.FilteredModels1.aa.fasta
-MELLP  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/Mlaricis_populina.FilteredModels3.aa.fasta
-PUCGR  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/PUCGR_puccinia_graminis_f._sp._tritici_2_proteins.fasta
-USTMA  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ustilago_maydis_1_proteins.fasta
-BATDE  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/batrachochytrium_dendrobatidis_1_proteins.fasta
-ENCCU  /home/czmasek/DATA/SEQUENCES/GENOMES/FUNGAL/ENCCU.fasta
-DICDI  /home/czmasek/DATA/SEQUENCES/GENOMES/BAYLOR/dicty_primary_protein
-DICPU  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Dicpu1_best_proteins.fasta
-ENTHI  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/EHA1.pep
-PHYPA  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Phypa1_1.FilteredModels.fasta
-SELMO  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Selmo1_GeneModels_FilteredModels3_aa.fasta
-ARATH  /home/czmasek/DATA/SEQUENCES/GENOMES/TAIR/TAIR7_pep_20070425
-ARALY  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Araly1_GeneModels_FilteredModels6_aa.fasta
-VITVI  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Vitis_vinifera_peptide_v1.fa
-POPTR  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Poptr1_1.JamboreeModels.fasta
-ORYSA  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/osa1_5_chr1_12_tigr.fasta
-ORYSJ  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/os_japonica.cds-ami.300503
-SORBI  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Sorbi1_GeneModels_FilteredModels6_aa.fasta
-OSTLU  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/OSTLU.FM.aa.fasta
-OSTTA  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/O.tauri.FM.aa.fasta
-OSTRC  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/OstRCC809.FM1.aa.fasta
-MICPU  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/MicromonasCCMP1545.FrozenGeneCatalog_20080206.aa.fasta
-MIC99  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/MicromonasRCC299.FrozenGeneCatalog_20080206.aa.fasta
-CHLRE  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Chlre3_1.GeneCatalogProteins.6JUL06.fasta
-VOLCA  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/VOLCA.proteins.FilteredModels2.fasta
-CHLSP  /home/czmasek/DATA/SEQUENCES/GENOMES/PLANTS/Chlorella_NC64A.best_proteins.fasta
-CYAME  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/CYAME_cds.fasta
-PHATR  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Phatr2_geneModels_FilteredModels2_aa.fasta
-THAPS  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Thaps3_geneModels_FilteredModels2_aa.fasta
-AURAN  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.Auran1_FilteredModels3.fasta
-PHYSO  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/proteins.FM_Physo1_1.fasta
-PHYRM  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/proteins.FM_Phyra1_1.fasta
-PHYIN  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/phytophthora_infestans_1_proteins.fasta
-PHYCP  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PhycaF7_best_proteins.fasta
-TETTH  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TTA1_08302006.pep
-PARTE  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Paramecium_peptide_v1.fa
-CRYHO  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/ChominisAnnotatedProtein.fsa
-CRYPV  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/CparvumAnnotatedProtein.fsa
-TOXGO  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TgondiiAnnotatedProteins_toxoDB-4.2.fasta
-EIMTE  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/GeneDB_Etenella_Proteins
-PLACH  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PchabaudiAnnotatedProteins_plasmoDB-5.3.fasta
-PLAFA  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PfalciparumAnnotatedProteins_plasmoDB-5.3.fasta
-PLAYO  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PLAYO_PYA1.pep
-PLAVI  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/PvivaxAnnotatedProteins_PlasmoDB-5.5.fasta
-THEPA  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/THEPA.fasta
-THEAN  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TANN.GeneDB.pep
-EMIHU  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/Emihu1_best_proteins.fasta
-TRYBB  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TBA1.pep
-LEIMA  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/LEIMA_GeneDB_Protein_database_110506
-GIALA  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/GlambliaAnnotatedProteins_GiardiaDB-1.0.fasta
-TRIVA  /home/czmasek/DATA/SEQUENCES/GENOMES/PROTIST/TvaginalisAnnotatedProteins_TrichDB-1.0.fasta
-NAEGR  /home/czmasek/DATA/SEQUENCES/GENOMES/JGI/Naegr1_best_proteins.fasta
-SULSO  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULSO_AE006641.faa
-SULTO  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULTO_BA000023.faa
-SULAC  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/SULAC_CP000077.faa
-METS5  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METS5_NC_009440.faa
-AERPE  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/AERPE_BA000002.faa
-HYPBU  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HYPBU_NC_008818.faa
-IGNH4  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/IGNH4_NC_009776.faa
-STAMF  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/STAMF_NC_009033.faa
-PYRAE  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAE_AE009441.faa
-PYRAR  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAR_NC_009376.faa
-PYRCJ  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRCJ_NC_009073.faa
-PYRIL  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRIL_NC_008701.faa
-CALMA  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/CALMA_NC_009954.faa
-THEPD  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEPD_NC_008698.faa
-THENV  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THENV_NC_010525.faa
-NITMA  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NITMA_NC_010085.faa
-METJA  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METJA_m_jannaschii_dsm2661.pep
-METMP  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMP_BX950229.faa
-META3  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/META3_NC_009635.faa
-METVS  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METVS_NC_009634.faa
-PYRFU  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRFU_AE009950.faa
-PYRAB  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRAB_AL096836.faa
-PYRHO  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PYRHO_BA000001.faa
-THEKO  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEKO_AP006878.faa
-THEON  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEON_NC_011529.faa
-METMA  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMA_AE008384.faa
-METAC  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METAC_AE010299.faa
-METBF  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METBF_CP000099.faa
-METBU  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METBU_CP000300.faa
-METTP  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METTP_NC_008553.faa
-METHU  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METHU_CP000254.faa
-METLZ  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METLZ_NC_008942.faa
-METMJ  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METMJ_NC_009051.faa
-METB6  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METB6_NC_009712.faa
-NATPH  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NATPH_CR936257.faa
-HALSP  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALSP_AE004437.faa
-HALS3  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALS3.fasta
-HALMA  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALMA_AY596297.faa
-HALWD  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/HALWD_AM180088.faa
-ARCFU  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/ARCFU_AE000782.faa
-THEVO  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEVO_BA000011.faa
-THEAC  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/THEAC_AL139299.faa
-PICTO  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/PICTO_AE017261.faa
-METTH  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METTH_AE000666.faa
-METST  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METST_CP000102.faa
-METS3  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METS3_NC_009515.faa
-METKA  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/METKA_AE009439.faa
-KORCR  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/KORCR_NC_010482.faa
-NANEQ  /home/czmasek/DATA/SEQUENCES/GENOMES/ARCHAEA/NANEQ_AE017199.faa
-BACSU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACSU_SLR16.1_prot.txt
-BACAN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACAN_ames.pep
-GEOKA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOKA_BA000043.faa
-BACHD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACHD_NC_002570.faa
-LISMO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LISMO_4b_h7858.pep
-STAAU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STAAU_AJ938182.faa
-CLOP1  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CLOP1_c_perfringens_atcc13124.pep
-DESHA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESHA_AP008230.faa
-CARHZ  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CARHZ_2901.pep
-THETN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THETN_AE008691.faa
-LACAC  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LACAC_CP000033.faa
-STRPN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRPN_s_pneumoniae_tigr4.pep
-STRPY  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRPY_AE009949.faa
-LACLA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LACLA_NC_002662.faa
-MESFL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MESFL_AE017263.faa
-MYCPN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCPN_U00089.faa
-MYCGE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCGE_g_37.pep
-UREPA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/UREPA_NC_010503.faa
-PELUB  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PELUB_CP000084.faa
-RICTY  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RICTY_AE017197.faa
-CAUCR  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CAUCR_c_crescentus_cb15.pep
-ROSDO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ROSDO_CP000362.faa
-RHOS1  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOS1.faa
-BRAJA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BRAJA_BA000040.faa
-SINME  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SINME.faa
-RHIEC  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHIEC.faa
-AGRT5  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AGRT5.faa
-BARHE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BARHE_BX897699.faa
-RHOPT  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOPT_NC_011004.faa
-RHORU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHORU_CP000230.faa
-ACICY  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACICY.fasta
-THIDE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THIDE_CP000116.faa
-NITMU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITMU_CP000103.faa
-NITEU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITEU_AL954747.faa
-DECAR  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DECAR_CP000089.faa
-RALME  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RALME.faa
-RHOFT  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOFT_NC_007901.faa
-NEIME  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NEIME_AL157959.faa
-DESDE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESDE_CP000112.faa
-GEOME  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOME_CP000148.faa
-GEOSL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GEOSL_AE017180.faa
-ANADE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ANADE_CP000251.faa
-MYXXA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYXXA_CP000113.faa
-SYNAS  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNAS_CP000252.faa
-DESOL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESOL_NC_009943.faa
-DESPS  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DESPS.faa
-HELPH  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HELPH_CP000241.faa
-CAMJE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CAMJE_c_jejuni_rm1221.pep
-THIDN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THIDN_CP000153.faa
-NITSB  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITSB_NC_009662.faa
-SULNB  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SULNB_NC_009663.faa
-ECOLI  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ECOLI_U00096.faa
-ECO57  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ECO57_AE005174.faa
-PHOLU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PHOLU_BX470251.faa
-SALTY  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SALTY.faa
-SHIFL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SHIFL_AE014073.faa
-YERPE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/YERPE.faa
-PASMU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PASMU_AE004439.faa
-HAEIN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HAEIN_kw20_rd.pep
-LEGPN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LEGPN.faa
-THICR  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THICR_CP000109.faa
-PHOPR  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PHOPR_CR354531.faa
-VIBCH  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/VIBCH_el_tor_n16961.pep
-PSEF5  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEF5_pf_5.pep
-PSEPF  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEPF_CP000094.faa
-PSEAE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PSEAE_AE004091.faa
-CHRSD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHRSD_CP000285.faa
-XANAC  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/XANAC_AE008923.faa
-XYLFT  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/XYLFT_AE009442.faa
-ACIFE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACIFE_atcc_23270.pep
-NITOC  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NITOC.faa
-ALHEH  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ALHEH_NC_008340.faa
-HALHL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HALHL_NC_008789.faa
-IDILO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/IDILO_AE017340.faa
-SHEDO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SHEDO_CP000302.faa
-FRATU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FRATU_AJ749949.faa
-BIFLO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BIFLO_AE014295.faa
-CORJK  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CORJK_CR931997.faa
-MYCTU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCTU_m_tuberculosis_cdc1551.pep
-STRCO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/STRCO_48_82.faa
-RHOR1  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOR1.faa
-MYCLE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MYCLE_NC_002677.faa
-THEFY  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEFY_CP000088.faa
-KOCRD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/KOCRD_NC_010617.faa
-KINRD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/KINRD
-RUBXD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RUBXD_CP000386.faa
-AQUAE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AQUAE_AE000657.faa
-HYDY0  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HYDY0_NC_011126.faa
-SULYO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SULYO_NC_010730.faa
-THEMA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEMA_t_maritima_msb8.pep
-THELT  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THELT_NC_009828.faa
-FERNB  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FERNB_NC_009718.faa
-SALRD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SALRD_s_ruber.pep
-CYTH3  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CYTH3_CP000383.faa
-BACFR  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACFR_AP006841.faa
-BACTN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BACTN_AE015928.faa
-PORGI  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PORGI_w83.pep
-FLAJO  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FLAJO_NC_009441.faa
-GRAFK  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GRAFK_NC_008571.faa
-CHLTE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLTE_c_tepidum_tls.pep
-CHLP8  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLP8_NC_011027.faa
-CHLTA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLTA_NC_011026.faa
-CHLPB  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLPB_NC_010831.faa
-PROVI  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROVI_NC_009337.faa
-CHLCH  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLCH_CP000108.faa
-PELLU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PELLU_CP000096.faa
-PROAE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROAE
-DEHE1  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEHE1_d_ethenogenes_195.pep
-DEHSB  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEHSB_NC_009455.faa
-CHLAU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLAU_NC_010175.faa
-ROSCA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ROSCA_NC_009767.faa
-HERAU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/HERAU.faa
-DEIRA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEIRA_d_radiodurans_r1.pep
-DEIGD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DEIGD_58_59_56.faa
-THETH  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THETH_AE01722x.faa
-SYNEL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNEL_AP008231.faa
-SYNS3  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNS3_synechococcus_cc9311.pep
-CYAA2  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CYAA2
-MICAN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/MICAN_NC_010296.faa
-SYNY3  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SYNY3
-THEEL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEEL_NC_004113.faa
-NOSS7  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NOSS7_BA000019.faa
-NOSP7  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/NOSP7
-ANAVA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ANAVA.faa
-GLOVI  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/GLOVI_NC_005125.faa
-PROMA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMA_NC_008816.faa
-PROMP  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMP_NC_005072.faa
-PROMM  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/PROMM_NC_005042.faa
-TRIER  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/TRIER_NC_008312.faa
-ACAMR  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACAMR.fasta
-BORBU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/BORBU_b_burgdorferi_b31.pep
-TREPA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/TREPA_t_pallidum_nichols.pep
-LEPIC  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/LEPIC
-CHLPN  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLPN_c_pneumoniae_ar39.pep
-CHLMU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLMU_NC_002620.faa
-CHLFF  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/CHLFF_AP006861.faa
-FUSNU  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/FUSNU_AE009951.faa
-SOLUS  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/SOLUS_NC_008536.faa
-ACIBL  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/ACIBL_NC_008009.faa
-RHOBA  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/RHOBA_NC_005027.faa
-OPITE  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/OPITE_NC_010571.faa
-METI4  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/METI4_NC_010794.faa
-AKKM8  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/AKKM8_NC_010655.faa
-DICT6  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/DICT6_NC_011297.faa
-THEYD  /home/czmasek/DATA/SEQUENCES/GENOMES/BACTERIA/THEYD_NC_011296.faa
+# Last updated: 140709
+#
+# Ophistokonta::Animals (mammals)
+BOVIN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BOVIN.fasta
+CALJA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CALJA.fasta
+CANFA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CANFA.fasta
+CAVPO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAVPO.fasta
+FELCA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/FELCA.fasta
+GORGO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GORGO.fasta
+HETGA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HETGA.fasta
+HORSE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HORSE.fasta
+HUMAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HUMAN.fasta
+LOXAF   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LOXAF.fasta
+MACMU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MACMU.fasta
+MONDO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MONDO.fasta
+MOUSE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MOUSE.fasta
+MYOLU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MYOLU.fasta
+NOMLE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NOMLE.fasta
+ORNAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ORNAN.fasta
+OTOGA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OTOGA.fasta
+PANTR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PANTR.fasta
+PIG /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PIG.fasta
+PONAB   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PONAB.fasta
+RABIT   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RABIT.fasta
+RAT /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RAT.fasta
+SPETR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SPETR.fasta
+# Ophistokonta::Animals (except mammals)
+ACRDI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ACRDI.fasta
+ACREC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ACREC.fasta
+ACYPI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ACYPI.fasta
+AEDAE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AEDAE.fasta
+AMPQE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AMPQE.fasta
+ANAPL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ANAPL.fasta
+ANOCA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ANOCA.fasta
+ANOGA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ANOGA.fasta
+APIME   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/APIME.fasta
+ASTMX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASTMX.fasta
+ATTCE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ATTCE.fasta
+BOMMO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BOMMO.fasta
+BRAFL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BRAFL.fasta
+BRUMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BRUMA.fasta
+CAEBE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAEBE.fasta
+CAEBR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAEBR.fasta
+CAEEL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAEEL.fasta
+CAEJA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAEJA.fasta
+CAERE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAERE.fasta
+CALMI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CALMI.fasta
+CAMFO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAMFO.fasta
+CHICK   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHICK.fasta
+CIOIN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CIOIN.fasta
+CIOSA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CIOSA.fasta
+CLOSI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CLOSI.fasta
+CRAGI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CRAGI.fasta
+CAPTE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAPTE.fasta
+CULPI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CULPI.fasta
+DANPL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DANPL.fasta
+DANRE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DANRE.fasta
+DAPPU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DAPPU.fasta
+DROAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROAN.fasta
+DROER   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROER.fasta
+DROGR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROGR.fasta
+DROME   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROME.fasta
+DROMO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROMO.fasta
+DROPE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROPE.fasta
+DROPS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROPS.fasta
+DROSE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROSE.fasta
+DROSI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROSI.fasta
+DROVI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROVI.fasta
+DROWI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROWI.fasta
+DROYA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DROYA.fasta
+ECHMU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ECHMU.fasta
+FICAL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/FICAL.fasta
+GADMO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GADMO.fasta
+GASAC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GASAC.fasta
+HELRO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HELRO.fasta
+HYDVU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HYDVU.fasta
+HYMMI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HYMMI.fasta
+IXOSC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/IXOSC.fasta
+LATCH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LATCH.fasta
+LEPOC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LEPOC.fasta
+LOTGI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LOTGI.fasta
+LYTVA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LYTVA.fasta
+MELGA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MELGA.fasta
+MNELE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MNELE.fasta
+NASVI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NASVI.fasta
+NEMVE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NEMVE.fasta
+OIKDI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OIKDI.fasta
+OPHHA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OPHHA.fasta
+ORENI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ORENI.fasta
+ORYLA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ORYLA.fasta
+PATMI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PATMI.fasta
+PEDHC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PEDHC.fasta
+PELSI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PELSI.fasta
+PETMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PETMA.fasta
+PINFU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PINFU.fasta
+PRIPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PRIPA.fasta
+SACKO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SACKO.fasta
+SCHMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SCHMA.fasta
+STRMM   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/STRMM.fasta
+STRPU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/STRPU.fasta
+TAEGU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TAEGU.fasta
+TAKRU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TAKRU.fasta
+TETNG   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TETNG.fasta
+TETUR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TETUR.fasta
+TRIAD   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRIAD.fasta
+TRICA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRICA.fasta
+TRISP   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRISP.fasta
+WUCBA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/WUCBA.fasta
+XENTR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/XENTR.fasta
+XIPMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/XIPMA.fasta
+# Ophistokonta::Choanoflagellates
+SALS5   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SALS5.fasta
+MONBE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MONBE.fasta
+# Ophistokonta::Filasterea
+CAPO3   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAPO3.fasta
+# Ophistokonta::Ichthyosporea
+SARXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SARXX.fasta
+# Ophistokonta::Fungi
+AALXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AALXX.fasta
+AGABU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AGABU.fasta
+AJECG   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AJECG.fasta
+ALLMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ALLMA.fasta
+APMXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/APMXX.fasta
+ASHGO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASHGO.fasta
+ASPCL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASPCL.fasta
+ASPFN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASPFN.fasta
+ASPNC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASPNC.fasta
+BATDJ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BATDJ.fasta
+BCOXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BCOXX.fasta
+BOTF4   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BOTF4.fasta
+CANAL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CANAL.fasta
+CANTT   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CANTT.fasta
+CERSU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CERSU.fasta
+CHAGB   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHAGB.fasta
+COCIM   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/COCIM.fasta
+COCSA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/COCSA.fasta
+COPC7   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/COPC7.fasta
+CPUXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CPUXX.fasta
+CREXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CREXX.fasta
+CRYNE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CRYNE.fasta
+DEBHA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DEBHA.fasta
+DICSQ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DICSQ.fasta
+EDHAE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/EDHAE.fasta
+EMENI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/EMENI.fasta
+ENCCU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENCCU.fasta
+ENCHA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENCHA.fasta
+FPIXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/FPIXX.fasta
+GIBZE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GIBZE.fasta
+GLOTR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GLOTR.fasta
+HETAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HETAN.fasta
+HYPVG   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HYPVG.fasta
+JARXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/JARXX.fasta
+KLULA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/KLULA.fasta
+LACBS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LACBS.fasta
+MAGGR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MAGGR.fasta
+MALGO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MALGO.fasta
+MELLP   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MELLP.fasta
+SPHMS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SPHMS.fasta
+MUCCI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MUCCI.fasta
+MVNXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MVNXX.fasta
+MYCGM   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MYCGM.fasta
+NAUCC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NAUCC.fasta
+NEOFI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NEOFI.fasta
+NEUCR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NEUCR.fasta
+PFIXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PFIXX.fasta
+PHANO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHANO.fasta
+PHYBL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHYBL.fasta
+PIRSE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PIRSE.fasta
+PLEOS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PLEOS.fasta
+PNECA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PNECA.fasta
+PPLXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PPLXX.fasta
+PUCGR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PUCGR.fasta
+PYRTR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRTR.fasta
+RHIID   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RHIID.fasta
+RHIO9   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RHIO9.fasta
+RHIOR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RHIOR.fasta
+RHOGR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RHOGR.fasta
+SCHJY   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SCHJY.fasta
+SCHOT   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SCHOT.fasta
+SCHPO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SCHPO.fasta
+SCLS1   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SCLS1.fasta
+SERL9   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SERL9.fasta
+SETTU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SETTU.fasta
+SPIPN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SPIPN.fasta
+SPORO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SPORO.fasta
+THIHA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THIHA.fasta
+TRAHO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRAHO.fasta
+TRAVE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRAVE.fasta
+TREME   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TREME.fasta
+TUBMM   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TUBMM.fasta
+UNCRE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/UNCRE.fasta
+USTMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/USTMA.fasta
+VAVCU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VAVCU.fasta
+VITCO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VITCO.fasta
+WALSC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/WALSC.fasta
+WOLCO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/WOLCO.fasta
+YARLI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/YARLI.fasta
+YEAST   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/YEAST.fasta
+# Ophistokonta::Fonticula & Nucleariidae
+FALXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/FALXX.fasta
+# Apusozoa
+TTRXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TTRXX.fasta
+# Amoebozoa
+DICDI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DICDI.fasta
+DICFS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DICFS.fasta
+DICPU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DICPU.fasta
+ENTBH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENTBH.fasta
+ENTDS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENTDS.fasta
+ENTHI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENTHI.fasta
+POLPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/POLPA.fasta
+# Viridaeplantae::Streptophyta
+AMBTC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AMBTC.fasta
+AQUCA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AQUCA.fasta
+ARALY   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ARALY.fasta
+ARATH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ARATH.fasta
+BRADI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BRADI.fasta
+CARPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CARPA.fasta
+CCLXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CCLXX.fasta
+CITSI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CITSI.fasta
+CUCSA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CUCSA.fasta
+EUCGR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/EUCGR.fasta
+FRAVE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/FRAVE.fasta
+HORVD   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HORVD.fasta
+MAIZE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MAIZE.fasta
+MANES   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MANES.fasta
+MEDTR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MEDTR.fasta
+MIMGU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MIMGU.fasta
+MUSAM   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MUSAM.fasta
+ORYSJ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ORYSJ.fasta
+PHYPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHYPA.fasta
+PICAB   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PICAB.fasta
+POPTR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/POPTR.fasta
+PRUPE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PRUPE.fasta
+RICCO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RICCO.fasta
+SELML   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SELML.fasta
+SETIT   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SETIT.fasta
+SOLLC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SOLLC.fasta
+SOLTU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SOLTU.fasta
+SORBI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SORBI.fasta
+SOYBN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SOYBN.fasta
+THEHA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEHA.fasta
+VITVI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VITVI.fasta
+# Viridaeplantae::Chlorophyta
+ASCXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASCXX.fasta
+CHLRE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLRE.fasta
+CHLVA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLVA.fasta
+CSUXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CSUXX.fasta
+MICPC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MICPC.fasta
+MICSR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/MICSR.fasta
+ORCXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ORCXX.fasta
+OSTLU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OSTLU.fasta
+OSTTA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OSTTA.fasta
+VOLCA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VOLCA.fasta
+# Rhodophyta
+CYAME   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CYAME.fasta
+# Glaucophyta
+CYAPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CYAPA.fasta
+# Chromalveolates
+AKEXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AKEXX.fasta
+ALIXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ALIXX.fasta
+AURAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AURAN.fasta
+BABBO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BABBO.fasta
+BLAHO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BLAHO.fasta
+CRYHO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CRYHO.fasta
+CRYPI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CRYPI.fasta
+EIMAC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/EIMAC.fasta
+ICHMG   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ICHMG.fasta
+PERM5   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PERM5.fasta
+ECTSI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ECTSI.fasta
+EMIHU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/EMIHU.fasta
+FCYXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/FCYXX.fasta
+GUITH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GUITH.fasta
+HYAAE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HYAAE.fasta
+PARTE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PARTE.fasta
+PHATR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHATR.fasta
+PHYCP   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHYCP.fasta
+PHYIN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHYIN.fasta
+PHYRM   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHYRM.fasta
+PHYSO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PHYSO.fasta
+PLACH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PLACH.fasta
+PLAF7   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PLAF7.fasta
+PLAVS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PLAVS.fasta
+PLAYO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PLAYO.fasta
+PYTUL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYTUL.fasta
+SAGXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SAGXX.fasta
+TETTS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TETTS.fasta
+THAOC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THAOC.fasta
+THAPS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THAPS.fasta
+THEAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEAN.fasta
+THEPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEPA.fasta
+TOXGO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TOXGO.fasta
+# Excavata
+BODSA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BODSA.fasta
+GIAIC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GIAIC.fasta
+LEIBR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LEIBR.fasta
+LEIIN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LEIIN.fasta
+LEIMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LEIMA.fasta
+NAEGR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NAEGR.fasta
+TRIVA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRIVA.fasta
+TRYB2   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRYB2.fasta
+# Rhizaria
+BIGNA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BIGNA.fasta
+RETFI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RETFI.fasta
+# Archaea
+AERPE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AERPE.fasta
+ARCFU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ARCFU.fasta
+CALMQ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CALMQ.fasta
+HALMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HALMA.fasta
+HALS3   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HALS3.fasta
+HALSP   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HALSP.fasta
+HALWD   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HALWD.fasta
+HYPBU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/HYPBU.fasta
+IGNH4   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/IGNH4.fasta
+KORCO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/KORCO.fasta
+META3   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/META3.fasta
+METAC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METAC.fasta
+METB6   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METB6.fasta
+METBF   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METBF.fasta
+METBU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METBU.fasta
+METHU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METHU.fasta
+METJA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METJA.fasta
+METKA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METKA.fasta
+METLZ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METLZ.fasta
+METMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METMA.fasta
+METMJ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METMJ.fasta
+METMP   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METMP.fasta
+METS3   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METS3.fasta
+METS5   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METS5.fasta
+METST   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METST.fasta
+METTH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METTH.fasta
+METTP   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METTP.fasta
+METVS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/METVS.fasta
+NANEQ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NANEQ.fasta
+NATPH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NATPH.fasta
+NITMS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NITMS.fasta
+PICTO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PICTO.fasta
+PYRAB   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRAB.fasta
+PYRAE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRAE.fasta
+PYRAR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRAR.fasta
+PYRCJ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRCJ.fasta
+PYRFU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRFU.fasta
+PYRHO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRHO.fasta
+PYRIL   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/PYRIL.fasta
+THEKO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEKO.fasta
+STAMF   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/STAMF.fasta
+SULAC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SULAC.fasta
+SULSO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SULSO.fasta
+SULTO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SULTO.fasta
+THEAC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEAC.fasta
+THENV   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THENV.fasta
+THEON   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEON.fasta
+THEPD   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEPD.fasta
+THEVO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEVO.fasta
+# Bacteria
+ACAM1   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ACAM1.fasta
+KORVE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/KORVE.fasta
+ACICY   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ACICY.fasta
+ACIFE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ACIFE.fasta
+AGRT5   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AGRT5.fasta
+AKKM8   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AKKM8.fasta
+ALHEH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ALHEH.fasta
+ANADE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ANADE.fasta
+ANAVT   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ANAVT.fasta
+AQUAE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AQUAE.fasta
+BACAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BACAN.fasta
+BACFR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BACFR.fasta
+BACHD   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BACHD.fasta
+BACSU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BACSU.fasta
+BACTN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BACTN.fasta
+BARHE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BARHE.fasta
+BIFLO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BIFLO.fasta
+BORBU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BORBU.fasta
+BRAJA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BRAJA.fasta
+CAMJE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAMJE.fasta
+CARHZ   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CARHZ.fasta
+CAUCR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CAUCR.fasta
+CHLAU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLAU.fasta
+CHLCH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLCH.fasta
+CHLFF   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLFF.fasta
+CHLMU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLMU.fasta
+CHLP8   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLP8.fasta
+CHLPB   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLPB.fasta
+CHLPN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLPN.fasta
+CHLTA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLTA.fasta
+CHLTE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLTE.fasta
+CHRSD   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHRSD.fasta
+CLOP1   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CLOP1.fasta
+CORJK   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CORJK.fasta
+CYTH3   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CYTH3.fasta
+DECAR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DECAR.fasta
+DEHE1   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DEHE1.fasta
+DEHSB   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DEHSB.fasta
+DEIGD   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DEIGD.fasta
+DEIRA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DEIRA.fasta
+DESDE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DESDE.fasta
+DESHA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DESHA.fasta
+DESPS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/DESPS.fasta
+ECO57   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ECO57.fasta
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