in progress
[jalview.git] / forester / data / tol_156.xml
index 616f2b1..80141c2 100644 (file)
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>\r
 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
 <phylogeny rooted="true" rerootable="false">\r
-  <name>tol_154.xml</name>\r
+  <name>tol_156</name>\r
   <clade>\r
     <taxonomy>\r
       <id provider="uniprot">131567</id>\r
                                             </taxonomy>\r
                                             <clade>\r
                                               <taxonomy>\r
-                                                <id provider="uniprot">8353</id>\r
-                                                <scientific_name>Xenopus</scientific_name>\r
-                                                <rank>genus</rank>\r
+                                                <id provider="uniprot">8342</id>\r
+                                                <scientific_name>Anura</scientific_name>\r
+                                                <rank>order</rank>\r
                                               </taxonomy>\r
                                               <clade>\r
                                                 <taxonomy>\r
-                                                  <id provider="uniprot">8355</id>\r
-                                                  <code>XENLA</code>\r
-                                                  <scientific_name>Xenopus laevis</scientific_name>\r
-                                                  <authority>Daudin, 1802</authority>\r
-                                                  <common_name>African clawed frog</common_name>\r
-                                                  <synonym>Bufo laevis</synonym>\r
-                                                  <rank>species</rank>\r
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
+                                                  <id provider="uniprot">8353</id>\r
+                                                  <scientific_name>Xenopus</scientific_name>\r
+                                                  <rank>genus</rank>\r
                                                 </taxonomy>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">8355</id>\r
+                                                    <code>XENLA</code>\r
+                                                    <scientific_name>Xenopus laevis</scientific_name>\r
+                                                    <authority>Daudin, 1802</authority>\r
+                                                    <common_name>African clawed frog</common_name>\r
+                                                    <synonym>Bufo laevis</synonym>\r
+                                                    <rank>species</rank>\r
+                                                    <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
+                                                  </taxonomy>\r
+                                                </clade>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">8364</id>\r
+                                                    <code>XENTR</code>\r
+                                                    <scientific_name>Xenopus tropicalis</scientific_name>\r
+                                                    <common_name>Western clawed frog</common_name>\r
+                                                    <synonym>Silurana tropicalis</synonym>\r
+                                                    <rank>species</rank>\r
+                                                    <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
+                                                  </taxonomy>\r
+                                                </clade>\r
                                               </clade>\r
                                               <clade>\r
                                                 <taxonomy>\r
-                                                  <id provider="uniprot">8364</id>\r
-                                                  <code>XENTR</code>\r
-                                                  <scientific_name>Xenopus tropicalis</scientific_name>\r
-                                                  <common_name>Western clawed frog</common_name>\r
-                                                  <synonym>Silurana tropicalis</synonym>\r
+                                                  <id provider="uniprot">8384</id>\r
+                                                  <code>BUFBU</code>\r
+                                                  <scientific_name>Bufo bufo</scientific_name>\r
+                                                  <common_name>European toad</common_name>\r
                                                   <rank>species</rank>\r
-                                                  <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
+                                                  <uri>http://www.naturephoto-cz.com/photos/others/common-toad-22611.jpg</uri>\r
                                                 </taxonomy>\r
                                               </clade>\r
                                             </clade>\r
                                             <clade>\r
                                               <taxonomy>\r
-                                                <id provider="uniprot">54263</id>\r
-                                                <code>MESAL</code>\r
-                                                <scientific_name>Mesotriton alpestris</scientific_name>\r
-                                                <common_name>Alpine newt</common_name>\r
-                                                <synonym>Ichthyosaura alpestris</synonym>\r
-                                                <rank>species</rank>\r
-                                                <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0403/0436.jpeg</uri>\r
+                                                <id provider="uniprot">8293</id>\r
+                                                <scientific_name>Caudata</scientific_name>\r
+                                                <rank>order</rank>\r
                                               </taxonomy>\r
+                                              <clade>\r
+                                                <taxonomy>\r
+                                                  <id provider="uniprot">1331674</id>\r
+                                                  <scientific_name>Pleurodelinae</scientific_name>\r
+                                                  <rank>subfamily</rank>\r
+                                                </taxonomy>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">54263</id>\r
+                                                    <code>MESAL</code>\r
+                                                    <scientific_name>Mesotriton alpestris</scientific_name>\r
+                                                    <common_name>Alpine newt</common_name>\r
+                                                    <synonym>Ichthyosaura alpestris</synonym>\r
+                                                    <synonym>Mesotriton alpestris</synonym>\r
+                                                    <rank>species</rank>\r
+                                                    <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0403/0436.jpeg</uri>\r
+                                                  </taxonomy>\r
+                                                </clade>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">8316</id>\r
+                                                    <code>NOTVI</code>\r
+                                                    <scientific_name>Notophthalmus viridescens</scientific_name>\r
+                                                    <common_name>Eastern newt</common_name>\r
+                                                    <synonym>Triturus viridescens</synonym>\r
+                                                    <rank>species</rank>\r
+                                                    <uri>http://www.jeffpippen.com/herps/enewt120908-9654sandybottomz.jpg</uri>\r
+                                                  </taxonomy>\r
+                                                </clade>\r
+                                              </clade>\r
+                                              <clade>\r
+                                                <taxonomy>\r
+                                                  <id provider="uniprot">8341</id>\r
+                                                  <code>SIRIN</code>\r
+                                                  <scientific_name>Siren intermedia</scientific_name>\r
+                                                  <common_name>Lesser siren</common_name>\r
+                                                  <rank>species</rank>\r
+                                                  <uri>http://us.i1.yimg.com/us.yimg.com/i/ligans/animals/m/ar0181_1m.jpg</uri>\r
+                                                </taxonomy>\r
+                                              </clade>\r
                                             </clade>\r
                                           </clade>\r
                                           <clade>\r
                                           <taxonomy>\r
                                             <id provider="uniprot">50557</id>\r
                                             <scientific_name>Insecta</scientific_name>\r
-                                            <common_name>true insects</common_name>\r
                                             <rank>class</rank>\r
                                           </taxonomy>\r
+                                          <reference doi="10.1146/annurev-ento-120710-100538">\r
+                                            <desc>Advances in Insect Phylogeny at the Dawn of the Postgenomic Era</desc>\r
+                                          </reference>\r
+                                          <reference>\r
+                                          </reference>\r
                                           <clade>\r
                                             <taxonomy>\r
                                               <id provider="uniprot">33340</id>\r
                                               <taxonomy>\r
                                                 <id provider="uniprot">33392</id>\r
                                                 <scientific_name>Endopterygota</scientific_name>\r
+                                                <synonym>Holometabola</synonym>\r
                                                 <rank>infraclass</rank>\r
                                               </taxonomy>\r
                                               <clade>\r
-                                                <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>\r
+                                                <name>Mecopterida &amp; Neuropteroidea</name>\r
                                                 <clade>\r
-                                                  <name>Lepidoptera &amp; Diptera</name>\r
+                                                  <taxonomy>\r
+                                                    <scientific_name>Mecopterida</scientific_name>\r
+                                                  </taxonomy>\r
+                                                  <reference>\r
+                                                    <desc>The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei</desc>\r
+                                                  </reference>\r
                                                   <clade>\r
                                                     <taxonomy>\r
                                                       <id provider="uniprot">7147</id>\r
                                                   </clade>\r
                                                   <clade>\r
                                                     <taxonomy>\r
-                                                      <id provider="uniprot">104431</id>\r
-                                                      <scientific_name>Obtectomera</scientific_name>\r
+                                                      <id provider="uniprot">37567</id>\r
+                                                      <scientific_name>Ditrysia</scientific_name>\r
                                                     </taxonomy>\r
                                                     <clade>\r
                                                       <taxonomy>\r
                                                 </clade>\r
                                                 <clade>\r
                                                   <taxonomy>\r
-                                                    <id provider="uniprot">7400</id>\r
-                                                    <scientific_name>Apocrita</scientific_name>\r
-                                                    <common_name>wasps, ants and bees</common_name>\r
+                                                    <id provider="uniprot">41088</id>\r
+                                                    <scientific_name>Cucujiformia</scientific_name>\r
+                                                    <rank>infraorder</rank>\r
                                                   </taxonomy>\r
                                                   <clade>\r
                                                     <taxonomy>\r
-                                                      <id provider="uniprot">7434</id>\r
-                                                      <scientific_name>Aculeata</scientific_name>\r
-                                                      <rank>suborder</rank>\r
+                                                      <id provider="uniprot">217634</id>\r
+                                                      <code>ANOGL</code>\r
+                                                      <scientific_name>Anoplophora glabripennis</scientific_name>\r
+                                                      <common_name>Asian longhorn beetle</common_name>\r
+                                                      <synonym>Anoplophora nobilis</synonym>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://bugguide.net/images/cache/WZMLBZXL2Z2HTH4HHR2H3H2HJH9H9Z5LJH5LWZ7LAZSLTH4HPZXHDHKLVZEH9ZEHRRPHJH7LAZPHZR4L3H7H3H9HZR.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">7070</id>\r
+                                                      <code>TRICA</code>\r
+                                                      <scientific_name>Tribolium castaneum</scientific_name>\r
+                                                      <common_name>Red flour beetle</common_name>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                </clade>\r
+                                              </clade>\r
+                                              <clade>\r
+                                                <taxonomy>\r
+                                                  <id provider="uniprot">7400</id>\r
+                                                  <scientific_name>Apocrita</scientific_name>\r
+                                                  <common_name>wasps, ants and bees</common_name>\r
+                                                </taxonomy>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">7434</id>\r
+                                                    <scientific_name>Aculeata</scientific_name>\r
+                                                    <rank>suborder</rank>\r
+                                                  </taxonomy>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">36668</id>\r
+                                                      <scientific_name>Formicidae</scientific_name>\r
+                                                      <rank>family</rank>\r
                                                     </taxonomy>\r
                                                     <clade>\r
                                                       <taxonomy>\r
-                                                        <id provider="uniprot">36668</id>\r
-                                                        <scientific_name>Formicidae</scientific_name>\r
-                                                        <common_name>ants</common_name>\r
-                                                        <rank>family</rank>\r
+                                                        <id provider="uniprot">34695</id>\r
+                                                        <scientific_name>Myrmicinae</scientific_name>\r
+                                                        <rank>subfamily</rank>\r
                                                       </taxonomy>\r
                                                       <clade>\r
                                                         <taxonomy>\r
-                                                          <id provider="uniprot">143999</id>\r
-                                                          <scientific_name>Attini</scientific_name>\r
-                                                          <rank>tribe</rank>\r
+                                                          <id provider="uniprot">12957</id>\r
+                                                          <code>ATTCE</code>\r
+                                                          <scientific_name>Atta cephalotes</scientific_name>\r
+                                                          <authority>Linnaeus, 1758</authority>\r
+                                                          <common_name>Leafcutter ant</common_name>\r
+                                                          <rank>species</rank>\r
+                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
                                                         </taxonomy>\r
-                                                        <clade>\r
-                                                          <taxonomy>\r
-                                                            <id provider="uniprot">12957</id>\r
-                                                            <code>ATTCE</code>\r
-                                                            <scientific_name>Atta cephalotes</scientific_name>\r
-                                                            <authority>Linnaeus, 1758</authority>\r
-                                                            <common_name>Leafcutter ant</common_name>\r
-                                                            <rank>species</rank>\r
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
-                                                          </taxonomy>\r
-                                                        </clade>\r
-                                                        <clade>\r
-                                                          <taxonomy>\r
-                                                            <id provider="uniprot">103372</id>\r
-                                                            <code>ACREC</code>\r
-                                                            <scientific_name>Acromyrmex echinatior</scientific_name>\r
-                                                            <authority>Forel, 1899</authority>\r
-                                                            <common_name>Panamanian leafcutter ant</common_name>\r
-                                                            <synonym>Acromyrmex octospinosus echinatior</synonym>\r
-                                                            <rank>species</rank>\r
-                                                            <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>\r
-                                                          </taxonomy>\r
-                                                        </clade>\r
                                                       </clade>\r
                                                       <clade>\r
                                                         <taxonomy>\r
-                                                          <id provider="uniprot">104421</id>\r
-                                                          <code>CAMFO</code>\r
-                                                          <scientific_name>Camponotus floridanus</scientific_name>\r
-                                                          <authority>Buckley, 1866</authority>\r
-                                                          <common_name>Florida carpenter ant</common_name>\r
+                                                          <id provider="uniprot">103372</id>\r
+                                                          <code>ACREC</code>\r
+                                                          <scientific_name>Acromyrmex echinatior</scientific_name>\r
+                                                          <authority>Forel, 1899</authority>\r
+                                                          <common_name>Panamanian leafcutter ant</common_name>\r
+                                                          <synonym>Acromyrmex octospinosus echinatior</synonym>\r
                                                           <rank>species</rank>\r
-                                                          <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>\r
+                                                          <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>\r
                                                         </taxonomy>\r
                                                       </clade>\r
                                                     </clade>\r
                                                     <clade>\r
                                                       <taxonomy>\r
-                                                        <id provider="uniprot">7460</id>\r
-                                                        <code>APIME</code>\r
-                                                        <scientific_name>Apis mellifera</scientific_name>\r
-                                                        <common_name>Honeybee</common_name>\r
+                                                        <id provider="uniprot">104421</id>\r
+                                                        <code>CAMFO</code>\r
+                                                        <scientific_name>Camponotus floridanus</scientific_name>\r
+                                                        <authority>Buckley, 1866</authority>\r
+                                                        <common_name>Florida carpenter ant</common_name>\r
                                                         <rank>species</rank>\r
-                                                        <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
+                                                        <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>\r
                                                       </taxonomy>\r
                                                     </clade>\r
                                                   </clade>\r
                                                   <clade>\r
                                                     <taxonomy>\r
-                                                      <id provider="uniprot">7425</id>\r
-                                                      <code>NASVI</code>\r
-                                                      <scientific_name>Nasonia vitripennis</scientific_name>\r
-                                                      <common_name>Parasitic wasp</common_name>\r
+                                                      <id provider="uniprot">7460</id>\r
+                                                      <code>APIME</code>\r
+                                                      <scientific_name>Apis mellifera</scientific_name>\r
+                                                      <common_name>Honeybee</common_name>\r
                                                       <rank>species</rank>\r
-                                                      <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
+                                                      <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
                                                     </taxonomy>\r
                                                   </clade>\r
                                                 </clade>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">7425</id>\r
+                                                    <code>NASVI</code>\r
+                                                    <scientific_name>Nasonia vitripennis</scientific_name>\r
+                                                    <common_name>Parasitic wasp</common_name>\r
+                                                    <rank>species</rank>\r
+                                                    <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
+                                                  </taxonomy>\r
+                                                </clade>\r
                                               </clade>\r
                                               <clade>\r
                                                 <taxonomy>\r
-                                                  <id provider="uniprot">7070</id>\r
-                                                  <code>TRICA</code>\r
-                                                  <scientific_name>Tribolium castaneum</scientific_name>\r
-                                                  <common_name>Red flour beetle</common_name>\r
-                                                  <rank>species</rank>\r
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>\r
+                                                  <id provider="uniprot">33341</id>\r
+                                                  <scientific_name>Orthopteroidea</scientific_name>\r
+                                                  <rank>infraclass</rank>\r
                                                 </taxonomy>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">6970</id>\r
+                                                    <scientific_name>Dictyoptera</scientific_name>\r
+                                                    <rank>superorder</rank>\r
+                                                  </taxonomy>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">6973</id>\r
+                                                      <code>BLAGE</code>\r
+                                                      <scientific_name>Blattella germanica</scientific_name>\r
+                                                      <common_name>German cockroach</common_name>\r
+                                                      <synonym>Blatta germanica</synonym>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://www.biopix.com/photosmedium/Blattella%20germanica%2000017.JPG</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">136037</id>\r
+                                                      <code>ZOONE</code>\r
+                                                      <scientific_name>Zootermopsis nevadensis</scientific_name>\r
+                                                      <common_name>Dampwood termite</common_name>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://bugguide.net/images/cache/GQA0PQ10VQPK4KAKRKWKSKEKLKWKPQZS5KBK1QCK7KJ05KOK8KAKRK9K4QUK6Q10RKWKHKT02QWKSKEK5Q9KPQD0PQ.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                </clade>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">6993</id>\r
+                                                    <scientific_name>Orthoptera</scientific_name>\r
+                                                    <rank>order</rank>\r
+                                                  </taxonomy>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">7009</id>\r
+                                                      <code>SCHAM</code>\r
+                                                      <scientific_name>Schistocerca americana</scientific_name>\r
+                                                      <common_name>American grasshopper</common_name>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://bugguide.net/images/cache/BH7HOHIHZRZLAZXLVZQL4ZKL4Z4H6Z4HRRNHLR5HZR2HAHGHAHSLAHKL1H7HDH7H3HUH1ZXLUZGL3H2HAHZLAHXH.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">51074</id>\r
+                                                      <code>GRYPE</code>\r
+                                                      <scientific_name>Gryllus pennsylvanicus</scientific_name>\r
+                                                      <common_name>Field cricket</common_name>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://bugguide.net/images/raw/GL9Z5L9Z8LJHWHHR6HRREHVZUHCHIH8Z7HVHMHGZ7HTHQL6ZXHOHWH3H5LUZ7L9ZRLVH5HDHQL.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                </clade>\r
                                               </clade>\r
                                             </clade>\r
                                             <clade>\r
                                                 </taxonomy>\r
                                                 <clade>\r
                                                   <taxonomy>\r
+                                                    <id provider="uniprot">33351</id>\r
+                                                    <scientific_name>Panheteroptera</scientific_name>\r
+                                                  </taxonomy>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">7536</id>\r
+                                                      <code>ONCFA</code>\r
+                                                      <scientific_name>Oncopeltus fasciatus</scientific_name>\r
+                                                      <common_name>Large milkweed bug</common_name>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://bugguide.net/images/cache/309QLSWQT0IKUKSK2KSKUKRKUKGKBKRKNK6QD05QC05Q6KZKPKGQD00K9KGQ2KLKWK8QV0KKO0EQV0EQNK8Q2KGQ10.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">13249</id>\r
+                                                      <code>RHOPR</code>\r
+                                                      <scientific_name>Rhodnius prolixus</scientific_name>\r
+                                                      <common_name>Triatomid bug</common_name>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                </clade>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
                                                     <id provider="uniprot">7029</id>\r
                                                     <code>ACYPI</code>\r
                                                     <scientific_name>Acyrthosiphon pisum</scientific_name>\r
                                                     <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>\r
                                                   </taxonomy>\r
                                                 </clade>\r
-                                                <clade>\r
-                                                  <taxonomy>\r
-                                                    <id provider="uniprot">13249</id>\r
-                                                    <code>RHOPR</code>\r
-                                                    <scientific_name>Rhodnius prolixus</scientific_name>\r
-                                                    <common_name>Triatomid bug</common_name>\r
-                                                    <rank>species</rank>\r
-                                                    <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
-                                                  </taxonomy>\r
-                                                </clade>\r
                                               </clade>\r
                                               <clade>\r
                                                 <taxonomy>\r
                                               <id provider="uniprot">568273</id>\r
                                               <scientific_name>Machilis germanica</scientific_name>\r
                                               <rank>species</rank>\r
-                                              <uri>http://www.naturefg.com/images/c-animals/machilis.jpg</uri>\r
+                                              <uri>http://www.lucianabartolini.net/Immagini/Microcoryphia/Machilis-sp-02.jpg</uri>\r
                                             </taxonomy>\r
                                           </clade>\r
                                         </clade>\r
                                           <code>CAEEL</code>\r
                                           <scientific_name>Caenorhabditis elegans</scientific_name>\r
                                           <rank>species</rank>\r
-                                          <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>\r
+                                          <uri>http://www.easternct.edu/~adams/images/celegansmain.jpg</uri>\r
                                         </taxonomy>\r
                                       </clade>\r
                                     </clade>\r
                               <scientific_name>Acropora digitifera</scientific_name>\r
                               <common_name>Staghorn coral</common_name>\r
                               <rank>species</rank>\r
-                              <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>\r
+                              <uri>http://mygenomix.files.wordpress.com/2011/07/sn-coral.jpg</uri>\r
                             </taxonomy>\r
                           </clade>\r
                           <clade>\r
                                                             <common_name>Inky cap fungus</common_name>\r
                                                             <synonym>Hormographiella aspergillata</synonym>\r
                                                             <rank>strain</rank>\r
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>\r
+                                                            <uri>http://www.pnas.org/content/107/26/cover-expansion.medium.gif</uri>\r
                                                           </taxonomy>\r
                                                         </clade>\r
                                                       </clade>\r
                   <taxonomy>\r
                     <id provider="uniprot">38254</id>\r
                     <scientific_name>Glaucocystophyceae</scientific_name>\r
-                    <synonym>Glaucophyta</synonym>\r
                     <rank>class</rank>\r
                   </taxonomy>\r
                   <clade>\r
                     <scientific_name>Emiliania huxleyi</scientific_name>\r
                     <synonym>Pontosphaera huxleyi</synonym>\r
                     <rank>species</rank>\r
-                    <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>\r
+                    <uri>http://www.nhm.ac.uk/resources-rx/images/1049/emiliania-huxleyi-light-microscope-image_68318_1.jpg</uri>\r
+                    <uri>http://cmore.soest.hawaii.edu/education/kidskorner/images/emiliania_600px.jpg</uri>\r
                   </taxonomy>\r
                 </clade>\r
                 <clade>\r
                 </taxonomy>\r
                 <clade>\r
                   <taxonomy>\r
-                    <id provider="uniprot">71427</id>\r
-                    <scientific_name>Allogromia laticollaris</scientific_name>\r
-                    <rank>species</rank>\r
-                    <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
+                    <id provider="uniprot">29178</id>\r
+                    <scientific_name>Foraminifera</scientific_name>\r
+                    <common_name>foraminifers</common_name>\r
+                    <rank>class</rank>\r
                   </taxonomy>\r
+                  <clade>\r
+                    <taxonomy>\r
+                      <id provider="uniprot">71427</id>\r
+                      <scientific_name>Allogromia laticollaris</scientific_name>\r
+                      <rank>species</rank>\r
+                      <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
+                    </taxonomy>\r
+                  </clade>\r
+                  <clade>\r
+                    <taxonomy>\r
+                      <id provider="uniprot">46433</id>\r
+                      <code>RETFI</code>\r
+                      <scientific_name>Reticulomyxa filosa</scientific_name>\r
+                      <rank>species</rank>\r
+                      <uri>http://forambarcoding.unige.ch/system/pictures/269/s600/R.filosa2.jpg</uri>\r
+                    </taxonomy>\r
+                  </clade>\r
                 </clade>\r
                 <clade>\r
                   <taxonomy>\r