Allow to retrieve a snapshot of the edited phylogenetic tree using javascript code...

[jalview.git] / forester / java / build.xml

diff --git a/forester/java/build.xml b/forester/java/build.xml
index 4f9d8f6..1492570 100644 (file)
--- a/forester/java/build.xml
+++ b/forester/java/build.xml
@@ -5,6 +5,7 @@
        <property name="classes.dir" value="classes" />
        <property name="jars.dir" value="resources" />
        <property name="itextjar" value="${jars.dir}/itextpdf-5.1.0.jar" />
+       <property name="commonscodecjar" value="${jars.dir}/commons-codec-1.5.jar" />
        <property name="forester_jar" value="forester.jar" />
        <property name="archaeopteryx_applets_jar" value="archaeopteryx_applets.jar" />
 
@@ -19,6 +20,9 @@
         <copy verbose="true"
           file="../resources/phyloxml_schema/1.10/phyloxml.xsd"
           todir="${classes.dir}/resources"/>
+        <copy verbose="true"
+          file="../resources/synth_laf/synth_look_and_feel_1.xml"
+          todir="${classes.dir}/resources"/>
     </target>
 
        <target name="compile" description="Compiles the Task" depends="clean">
@@ -30,7 +34,7 @@
 
        <target name="compile_applets_only" description="Compiles the Task" depends="clean">
                <mkdir dir="${classes.dir}" />
-               <javac source="1.5" target="1.5" debug="false" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar}">
+               <javac source="1.5" target="1.5" debug="false" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar};${commonscodecjar}">
                        <compilerarg value="-Xlint:deprecation" />
                </javac> 
        </target>
@@ -44,12 +48,6 @@
                 <exclude name="**/*Test*.class" />
             </patternset>
         </unjar>
-               <!--<unjar src="${fluorite_jar}" dest="${classes.dir}">
-                   <patternset>
-                        <include name="**/*.class"/>
-                        <exclude name="**/*Test*.class"/>
-                   </patternset>
-        </unjar>-->
                <jar level="9" destfile="${forester_jar}" basedir="${classes.dir}" excludes="**/Test.class" duplicate="fail" index="true">
                        <manifest>
                                <attribute name="Main-Class" value="org.forester.archaeopteryx.Archaeopteryx" />
@@ -58,8 +56,17 @@
        </target>
 
        <target name="jar_applets_only" description="JARs the classes files" depends="compile_applets_only,copy_resources">
+               <unjar src="${commonscodecjar}" dest="${classes.dir}">
+        <patternset>
+            <include name="**/*.class" />
+            <include name="**/*.afm" />
+            <include name="**/*.txt" />
+            <exclude name="**/*Test*.class" />
+        </patternset>
+    </unjar>
                <jar level="9" destfile="${archaeopteryx_applets_jar}" basedir="${classes.dir}" excludes="org/forester/application/** 
                                  org/forester/development/**
+                                 org/forester/evoinference/**
                                  org/forester/go/**
                                  org/forester/go/etc/**
                                  org/forester/pccx/**