"rio" work

[jalview.git] / forester / java / src / org / forester / analysis / TaxonomyDataManager.java

diff --git a/forester/java/src/org/forester/analysis/TaxonomyDataManager.java b/forester/java/src/org/forester/analysis/TaxonomyDataManager.java
index 2534792..2bc654f 100644 (file)
--- a/forester/java/src/org/forester/analysis/TaxonomyDataManager.java
+++ b/forester/java/src/org/forester/analysis/TaxonomyDataManager.java
@@ -265,7 +265,7 @@ public final class TaxonomyDataManager extends RunnableProcess {
                 phy.deleteSubtree( node, true );
             }
             phy.externalNodesHaveChanged();
-            phy.hashIDs();
+            phy.clearHashIdToNodeMap();
             phy.recalculateNumberOfExternalDescendants( true );
         }
         return not_found;
@@ -344,6 +344,7 @@ public final class TaxonomyDataManager extends RunnableProcess {
                     }
                     if ( match ) {
                         if ( up_tax != null ) {
+                            //TODO this is dead code?!
                             throw new AncestralTaxonomyInferenceException( "lineage \""
                                     + ForesterUtil.stringListToString( lineage, " > " ) + "\" is not unique" );
                         }