in progress

[jalview.git] / forester / java / src / org / forester / application / gsdi.java

diff --git a/forester/java/src/org/forester/application/gsdi.java b/forester/java/src/org/forester/application/gsdi.java
index c137638..6b58edf 100644 (file)
--- a/forester/java/src/org/forester/application/gsdi.java
+++ b/forester/java/src/org/forester/application/gsdi.java
@@ -74,7 +74,7 @@ public final class gsdi {
     final static private String REMAPPED_SUFFIX                        = "_gsdi_remapped.txt";
     final static private String PRG_NAME                               = "gsdi";
     final static private String PRG_VERSION                            = "1.000";
-    final static private String PRG_DATE                               = "120608";
+    final static private String PRG_DATE                               = "120629";
     final static private String PRG_DESC                               = "general speciation duplication inference";
     final static private String E_MAIL                                 = "phylosoft@gmail.com";
     final static private String WWW                                    = "www.phylosoft.org/forester";
@@ -471,7 +471,7 @@ public final class gsdi {
         System.out.println( " -" + gsdi.MOST_PARSIMONIOUS_OPTION
                 + ": use most parimonious duplication model for GSDI: " );
         System.out.println( "     assign nodes as speciations which would otherwise be assiged" );
-        System.out.println( "     as potential duplications dueof polytomies in the species tree" );
+        System.out.println( "     as potential duplications due to polytomies in the species tree" );
         System.out.println( " -" + gsdi.GUESS_FORMAT_OF_SPECIES_TREE
                 + ": to allow species tree in other formats than phyloXML (i.e. Newick, NHX, Nexus)" );
         System.out.println( " -" + gsdi.SDISE_OPTION
@@ -484,7 +484,7 @@ public final class gsdi {
         System.out.println( " in phyloXML format (unless option -" + gsdi.GUESS_FORMAT_OF_SPECIES_TREE + " is used)" );
         System.out.println();
         System.out.println( "Example: gsdi -" + ALLOW_STRIPPING_OF_GENE_TREE_OPTION
-                + "  gene_tree.xml tree_of_life.xml out.xml" );
+                + " gene_tree.xml tree_of_life.xml out.xml" );
         System.out.println();
     }
 }