import org.forester.go.OBOparser;
import org.forester.go.PfamToGoMapping;
import org.forester.go.PfamToGoParser;
-import org.forester.protein.DomainId;
public class pfam2go_extractor {
}
final SortedSet<String> pfams = new TreeSet<String>();
for( final PfamToGoMapping pfam_to_go_mapping : pfam2go ) {
- final DomainId domain_id = pfam_to_go_mapping.getKey();
+ final String domain_id = pfam_to_go_mapping.getKey();
final GoId go_id = pfam_to_go_mapping.getValue();
final Set<GoId> supers = GoUtils.getAllSuperGoIds( go_id, goid_to_term_map );
supers.add( go_id );