in progress

[jalview.git] / forester / java / src / org / forester / application / phyloxml_converter.java

diff --git a/forester/java/src/org/forester/application/phyloxml_converter.java b/forester/java/src/org/forester/application/phyloxml_converter.java
index bee52a0..6d45207 100644 (file)
--- a/forester/java/src/org/forester/application/phyloxml_converter.java
+++ b/forester/java/src/org/forester/application/phyloxml_converter.java
@@ -255,6 +255,9 @@ public class phyloxml_converter {
         if ( order_subtrees ) {
             for( final Phylogeny phy : phys ) {
                 PhylogenyMethods.orderAppearance( phy.getRoot(), true, true, DESCENDANT_SORT_PRIORITY.TAXONOMY );
+                phy.externalNodesHaveChanged();
+                phy.hashIDs();
+                phy.recalculateNumberOfExternalDescendants( true );
             }
         }
         try {