print_help();
System.exit( -1 );
}
- final List<String> allowed_options = new ArrayList<>();
+ final List<String> allowed_options = new ArrayList<String>();
allowed_options.add( OUTPUT_FORMAT_OPTION );
allowed_options.add( ID_NORM_OPTION );
final String dissallowed_options = cla.validateAllowedOptionsAsString( allowed_options );
else {
System.out.println( "Alignment length : " + ( int ) stats.getMax() );
}
- final List<MolecularSequence> output_seqs = new ArrayList<>();
+ final List<MolecularSequence> output_seqs = new ArrayList<MolecularSequence>();
int counter = 0;
final BufferedWriter output_map_writer;
if ( normalize_identifiers ) {