inprogress

[jalview.git] / forester / java / src / org / forester / application / rio.java

diff --git a/forester/java/src/org/forester/application/rio.java b/forester/java/src/org/forester/application/rio.java
index 6ef7350..3ccacf5 100644 (file)
--- a/forester/java/src/org/forester/application/rio.java
+++ b/forester/java/src/org/forester/application/rio.java
@@ -308,13 +308,13 @@ public class rio {
                     final NHXParser nhx = ( NHXParser ) p;
                     nhx.setReplaceUnderscores( false );
                     nhx.setIgnoreQuotes( true );
-                    nhx.setTaxonomyExtraction( NHXParser.TAXONOMY_EXTRACTION.YES );
+                    nhx.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGRESSIVE );
                 }
                 else if ( p instanceof NexusPhylogeniesParser ) {
                     final NexusPhylogeniesParser nex = ( NexusPhylogeniesParser ) p;
                     nex.setReplaceUnderscores( false );
                     nex.setIgnoreQuotes( true );
-                    nex.setTaxonomyExtraction( TAXONOMY_EXTRACTION.YES );
+                    nex.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGRESSIVE );
                 }
                 else {
                     throw new RuntimeException( "unknown parser type: " + p );