import java.io.IOException;
import org.forester.io.parsers.PhylogenyParser;
+import org.forester.io.parsers.util.ParserUtils;
import org.forester.io.writers.PhylogenyWriter;
import org.forester.phylogeny.Phylogeny;
import org.forester.phylogeny.PhylogenyMethods;
import org.forester.phylogeny.factories.ParserBasedPhylogenyFactory;
import org.forester.phylogeny.factories.PhylogenyFactory;
-import org.forester.util.ForesterUtil;
public class strip {
Phylogeny p = null;
try {
final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
- final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( infile, true );
+ final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( infile, true );
p = factory.create( infile, pp )[ 0 ];
}
catch ( final Exception e ) {
}
else {
names = new String[ args.length - 3 ];
- for( int i = 0; i < args.length - 3; ++i ) {
+ for( int i = 0; i < ( args.length - 3 ); ++i ) {
names[ i ] = args[ i + 3 ];
}
}
try {
final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
final File f = new File( file );
- final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( f, true );
+ final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( f, true );
p0 = factory.create( f, pp )[ 0 ];
}
catch ( final Exception e ) {