* Transfers branch length values from one Phylogeny to another. It is
* mainly a "main method" for method "copyBranchLengthValuesFrom( Phylogeny )"
* of org.forester.phylogeny.Phylogeny, to be used in other (Perl) programs.
- *
+ *
* @param args[0]
* Filename (String) for Phylogeny which has correct branch
* length values
* @param args[2]
* String Filename (String) for outputfile
* @param args[3]
- * String [number of tree with correct bl to use in case treefile contains more than one, default 0]
-
+ * String [number of tree with correct bl to use in case treefile contains more than one, default 0]
+
*/
public static void main( final String args[] ) {
Phylogeny phylogeny_w_bl = null; // Has correct branch lengths
* Important (but obvious): The topology of both trees needs to be the same.
* The method is not robust, and might produce wrong results if the internal
* topology differs or if the external node names are not unique.
- *
+ *
* @param from
* the Phylogeny to copy the support values from
* @param to