public static final String INDEPENDENT_DC_GAINS_FITCH_PARS_DC_MAPPED_OUTPUT_SUFFIX = "_indep_dc_gains_fitch_lists_MAPPED.txt";
public static final String INDEPENDENT_DC_GAINS_FITCH_PARS_DC_FOR_GO_MAPPING_MAPPED_OUTPUT_SUFFIX = "_indep_dc_gains_fitch_lists_for_go_mapping_MAPPED.txt";
public static final String INDEPENDENT_DC_GAINS_FITCH_PARS_DC_FOR_GO_MAPPING_MAPPED_OUTPUT_UNIQUE_SUFFIX = "_indep_dc_gains_fitch_lists_for_go_mapping_unique_MAPPED.txt";
+ private static final boolean PERFORM_DC_REGAIN_PROTEINS_STATS = true;
private static void checkWriteabilityForPairwiseComparisons( final PrintableDomainSimilarity.PRINT_OPTION domain_similarity_print_option,
final String[][] input_file_properties,
catch ( final IOException e3 ) {
e3.printStackTrace();
}
- final Map<String, DescriptiveStatistics> protein_length_stats_by_dc = new HashMap<String, DescriptiveStatistics>();
- final Map<String, DescriptiveStatistics> domain_number_stats_by_dc = new HashMap<String, DescriptiveStatistics>();
+ Map<String, DescriptiveStatistics> protein_length_stats_by_dc = null;
+ Map<String, DescriptiveStatistics> domain_number_stats_by_dc = null;
final Map<String, DescriptiveStatistics> domain_length_stats_by_domain = new HashMap<String, DescriptiveStatistics>();
+ if ( PERFORM_DC_REGAIN_PROTEINS_STATS ) {
+ protein_length_stats_by_dc = new HashMap<String, DescriptiveStatistics>();
+ domain_number_stats_by_dc = new HashMap<String, DescriptiveStatistics>();
+ }
// Main loop:
for( int i = 0; i < number_of_genomes; ++i ) {
System.out.println();