searhc of domains only when domains are shown!

[jalview.git] / forester / java / src / org / forester / archaeopteryx / AptxUtil.java

diff --git a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
index 5f8aa34..e355967 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
+++ b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
@@ -62,8 +62,7 @@ import javax.swing.JApplet;
 import javax.swing.JOptionPane;
 import javax.swing.text.MaskFormatter;
 
-import org.forester.analysis.AncestralTaxonomyInference;
-import org.forester.analysis.TaxonomyDataObtainer;
+import org.forester.analysis.TaxonomyDataManager;
 import org.forester.io.parsers.PhylogenyParser;
 import org.forester.io.parsers.phyloxml.PhyloXmlUtil;
 import org.forester.io.parsers.tol.TolParser;
@@ -83,7 +82,7 @@ import org.forester.phylogeny.iterators.PreorderTreeIterator;
 import org.forester.util.AsciiHistogram;
 import org.forester.util.DescriptiveStatistics;
 import org.forester.util.ForesterUtil;
-import org.forester.ws.uniprot.UniProtTaxonomy;
+import org.forester.ws.seqdb.UniProtTaxonomy;
 
 public final class AptxUtil {
 
@@ -465,7 +464,7 @@ public final class AptxUtil {
                         else {
                             UniProtTaxonomy up = null;
                             try {
-                                up = TaxonomyDataObtainer.obtainUniProtTaxonomy( temp_tax, null, null );
+                                up = TaxonomyDataManager.obtainUniProtTaxonomy( temp_tax, null, null );
                             }
                             catch ( final Exception e ) {
                                 e.printStackTrace();