inprogress

[jalview.git] / forester / java / src / org / forester / archaeopteryx / Archaeopteryx.java

diff --git a/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java b/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java
index 91a8fd9..c23dcca 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java
+++ b/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 
@@ -36,12 +36,6 @@ import org.forester.phylogeny.Phylogeny;
 import org.forester.phylogeny.PhylogenyMethods;
 import org.forester.util.ForesterUtil;
 
-//
-// java -javaagent:shiftone-jrat.jar -cp
-// $HOME/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/java/forester.jar:.
-// org.forester.archaeopteryx.Archaeopteryx
-// -c $HOME/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/_aptx_configuration_file
-//
 public final class Archaeopteryx {
 
     public static MainFrame createApplication( final Phylogeny phylogeny ) {
@@ -128,11 +122,14 @@ public final class Archaeopteryx {
         try {
             MainFrameApplication.createInstance( phylogenies, conf, title, current_dir );
         }
-        catch ( final Exception ex ) {
-            AptxUtil.unexpectedException( ex );
+        catch ( final OutOfMemoryError e ) {
+            AptxUtil.outOfMemoryError( e );
+        }
+        catch ( final Exception e ) {
+            AptxUtil.unexpectedException( e );
         }
-        catch ( final Error err ) {
-            AptxUtil.unexpectedError( err );
+        catch ( final Error e ) {
+            AptxUtil.unexpectedError( e );
         }
     }
 }
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