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[jalview.git] / forester / java / src / org / forester / archaeopteryx / ArchaeopteryxA.java

diff --git a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
index 87ba7b7..c78bde4 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
+++ b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
@@ -138,9 +138,9 @@ public class ArchaeopteryxA extends JApplet {
             _mainframe_applet = new MainFrameApplet( this, configuration, getSpeciesTreeUrlStr() );
             final URL tree_url = new URL( getTreeUrlStr() );
             final Phylogeny[] phys = AptxUtil.readPhylogeniesFromUrl( tree_url, configuration
-                                                                      .isValidatePhyloXmlAgainstSchema(), configuration.isReplaceUnderscoresInNhParsing(), configuration
-                                                                      .isInternalNumberAreConfidenceForNhParsing(), configuration.getTaxonomyExtraction(), configuration
-                                                                      .isMidpointReroot() );
+                    .isValidatePhyloXmlAgainstSchema(), configuration.isReplaceUnderscoresInNhParsing(), configuration
+                    .isInternalNumberAreConfidenceForNhParsing(), configuration.getTaxonomyExtraction(), configuration
+                    .isMidpointReroot() );
             if ( phys == null ) {
                 ForesterUtil.printErrorMessage( NAME, "phylogenies from [" + tree_url + "] are null" );
             }
@@ -183,12 +183,12 @@ public class ArchaeopteryxA extends JApplet {
         final String default_relation = getParameter( Constants.APPLET_PARAM_NAME_FOR_DEFAULT_SEQUENCE_RELATION_TYPE );
         if ( default_relation != null ) {
             getMainFrameApplet().getMainPanel().getControlPanel().getSequenceRelationTypeBox()
-            .setSelectedItem( default_relation );
+                    .setSelectedItem( default_relation );
         }
         final String default_sequence = getParameter( Constants.APPLET_PARAM_NAME_FOR_DEFAULT_QUERY_SEQUENCE );
         if ( default_sequence != null ) {
             getMainFrameApplet().getMainPanel().getControlPanel().getSequenceRelationBox()
-            .setSelectedItem( default_sequence );
+                    .setSelectedItem( default_sequence );
         }
         /* GUILHEM_END */
     }