public final static boolean __SYNTH_LF = false; // TODO remove me
public final static boolean ALLOW_DDBJ_BLAST = false;
public final static String PRG_NAME = "Archaeopteryx";
- final static String VERSION = "0.9816 PD";
- final static String PRG_DATE = "131024";
+ final static String VERSION = "0.986 J";
+ final static String PRG_DATE = "140220";
final static String DEFAULT_CONFIGURATION_FILE_NAME = "_aptx_configuration_file";
final static String[] DEFAULT_FONT_CHOICES = { "Arial", "Helvetica",
"Verdana", "Tahoma", "Dialog", "Lucida Sans", "SansSerif", "Sans-serif", "Sans" };
final static boolean VERBOSE_DEFAULT = false;
- final static int DOMAIN_STRUCTURE_DEFAULT_WIDTH = 200;
+ final static int DOMAIN_STRUCTURE_DEFAULT_WIDTH = 100;
final static String AUTHOR_EMAIL = "phyloxml@gmail.com";
- final static int DOMAIN_STRUCTURE_E_VALUE_THR_DEFAULT_EXP = 0;
+ final static int DOMAIN_STRUCTURE_E_VALUE_THR_DEFAULT_EXP = -3;
final static float BUTTON_ZOOM_IN_FACTOR = 1.25f;
final static float BUTTON_ZOOM_OUT_FACTOR = 1 / Constants.BUTTON_ZOOM_IN_FACTOR;
final static float BUTTON_ZOOM_IN_X_CORRECTION_FACTOR = 1.2f;
final static String APTX_REFERENCE = "Zmasek..."; //TODO
final static String PHYLOXML_REFERENCE = ForesterConstants.PHYLO_XML_REFERENCE;
final static String PHYLOXML_REFERENCE_SHORT = "Han MV and Zmasek CM (2009), BMC Bioinformatics, 10:356";
- final static short NUMBER_OF_DIGITS_AFTER_COMMA_FOR_BRANCH_LENGTH_VALUES_DEFAULT = 2;
+ final static short NUMBER_OF_DIGITS_AFTER_COMMA_FOR_BRANCH_LENGTH_VALUES_DEFAULT = 7;
final static short NUMBER_OF_DIGITS_AFTER_COMMA_FOR_CONFIDENCE_VALUES_DEFAULT = 1;
public static final boolean NH_PARSING_IGNORE_QUOTES_DEFAULT = false;
static final CLADOGRAM_TYPE CLADOGRAM_TYPE_DEFAULT = CLADOGRAM_TYPE.EXT_NODE_SUM_DEP;