remove single node root

[jalview.git] / forester / java / src / org / forester / archaeopteryx / Constants.java

diff --git a/forester/java/src/org/forester/archaeopteryx/Constants.java b/forester/java/src/org/forester/archaeopteryx/Constants.java
index 94dfc5d..7a300ff 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/Constants.java
+++ b/forester/java/src/org/forester/archaeopteryx/Constants.java
@@ -8,7 +8,7 @@
 // and Howard Hughes Medical Institute
 // Copyright (C) 2003-2007 Ethalinda K.S. Cannon
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -18,7 +18,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -37,11 +37,13 @@ import org.forester.util.ForesterConstants;
 public final class Constants {
 
     final static boolean        __ALLOW_PHYLOGENETIC_INFERENCE                                = true;
-    final static boolean        __RELEASE                                                     = false;                                                    // TODO remove me
-    final static boolean        __SNAPSHOT_RELEASE                                            = false;                                                    // TODO remove me
-    final static String         PRG_NAME                                                      = "Archaeopteryx";
-    final static String         VERSION                                                       = "0.960 beta A48";
-    final static String         PRG_DATE                                                      = "2011.01.28";
+    public final static boolean __RELEASE                                                     = false;                                                    // TODO remove me
+    public final static boolean __SNAPSHOT_RELEASE                                            = false;                                                    // TODO remove me
+    public final static boolean __SYNTH_LF                                                    = false;                                                    // TODO remove me
+    public final static boolean ALLOW_DDBJ_BLAST                                              = false;
+    public final static String  PRG_NAME                                                      = "Archaeopteryx";
+    final static String         VERSION                                                       = "0.977";
+    final static String         PRG_DATE                                                      = "121210";
     final static String         DEFAULT_CONFIGURATION_FILE_NAME                               = "_aptx_configuration_file";
     final static String[]       DEFAULT_FONT_CHOICES                                          = { "Verdana", "Tahoma",
             "Arial", "Helvetica", "Dialog", "Lucida Sans", "SansSerif", "Sans-serif", "Sans" };
@@ -58,7 +60,7 @@ public final class Constants {
     final static float          WHEEL_ZOOM_IN_X_CORRECTION_FACTOR                             = 1.085f;
     final static float          WHEEL_ZOOM_OUT_X_CORRECTION_FACTOR                            = 1 / Constants.WHEEL_ZOOM_IN_X_CORRECTION_FACTOR;
     static final boolean        SPECIAL_CUSTOM                                                = false;                                                    //TODO remove me
-    static final int            EXT_NODE_INFO_LENGTH_MAX                                      = 300;
+    static final double         EXT_NODE_INFO_LENGTH_MAX_RATIO                                = 0.95;
     static final Dimension      NODE_PANEL_SPLIT_MINIMUM_SIZE                                 = new Dimension( 100, 50 );
     static final Dimension      NODE_PANEL_SIZE                                               = new Dimension( 500, 600 );
     static final Dimension      NODE_FRAME_SIZE                                               = new Dimension( 520, 640 );
@@ -106,4 +108,5 @@ public final class Constants {
                                                                                                            144,
                                                                                                            144 );
     final static String         NCBI_ALL_DATABASE_SEARCH                                      = "http://www.ncbi.nlm.nih.gov/gquery/?term=";
+    final static short          DEFAULT_NODE_SHAPE_SIZE_DEFAULT                               = 6;
 }