private List<String> _click_to_names;
private int _collapse_cb_item;
private JCheckBox _color_acc_species;
+ private JCheckBox _color_acc_sequence;
private JCheckBox _color_according_to_annotation;
private boolean _color_branches;
- private JCheckBox _color_branches_cb;
+ private JCheckBox _use_visual_styles_cb;
private int _color_subtree_cb_item;
+ private int _change_node_font_item;
// The settings from the conf file
private final Configuration _configuration;
private int _copy_subtree_item;
private int _open_pdb_item;
private int _open_seq_web_item;
private int _open_tax_web_item;
+ private int _color_node_font_item;
private JButton _order;
private boolean _order_of_appearance;
private int _paste_subtree_item;
private int _reroot_cb_item;
private JButton _return_to_super_tree;
- private JLabel _search_found_label;
- private JButton _search_reset_button;
- private JTextField _search_tf;
+ // Search
+ private JLabel _search_found_label_0;
+ private JLabel _search_found_label_1;
+ private JButton _search_reset_button_0;
+ private JButton _search_reset_button_1;
+ private JTextField _search_tf_0;
+ private JTextField _search_tf_1;
private int _select_nodes_item;
private Sequence _selected_query_seq;
private JCheckBox _seq_relation_confidence_switch;
private JButton _show_whole;
private int _sort_descendents_item;
private Map<String, Color> _species_colors;
+ private Map<String, Color> _sequence_colors;
private int _subtree_cb_item;
private int _swap_cb_item;
private JButton _uncollapse_all;
@Override
public void actionPerformed( final ActionEvent e ) {
try {
+ if ( e.getSource() == _color_acc_sequence ) {
+ if ( _color_acc_species != null ) {
+ _color_acc_species.setSelected( false );
+ }
+ }
+ else if ( e.getSource() == _color_acc_species ) {
+ if ( _color_acc_sequence != null ) {
+ _color_acc_sequence.setSelected( false );
+ }
+
+ }
+
+
final TreePanel tp = getMainPanel().getCurrentTreePanel();
if ( tp == null ) {
return;
displayedPhylogenyMightHaveChanged( true );
}
else if ( e.getSource() == _show_domain_architectures ) {
- search();
+ search0();
+ search1();
displayedPhylogenyMightHaveChanged( true );
}
else if ( ( tp != null ) && ( tp.getPhylogeny() != null ) ) {
_mainpanel.getCurrentTreePanel().increaseDomainStructureEvalueThreshold();
displayedPhylogenyMightHaveChanged( true );
}
- else if ( e.getSource() == _search_tf ) {
- search();
+ else if ( e.getSource() == _search_tf_0 ) {
+ search0();
+ displayedPhylogenyMightHaveChanged( true );
+ }
+ else if ( e.getSource() == _search_tf_1 ) {
+ search1();
displayedPhylogenyMightHaveChanged( true );
}
+
+
+
+
else {
displayedPhylogenyMightHaveChanged( true );
}
public JCheckBox getColorAccSpeciesCb() {
return _color_acc_species;
}
+
+ public JCheckBox getColorAccSequenceCb() {
+ return _color_acc_sequence;
+ }
- public JCheckBox getColorBranchesCb() {
- return _color_branches_cb;
+ public JCheckBox getUseVisualStylesCb() {
+ return _use_visual_styles_cb;
}
public JCheckBox getDisplayAsPhylogramCb() {
case Configuration.color_according_to_species:
_color_acc_species = new JCheckBox( title );
_color_acc_species
- .setToolTipText( "To colorize taxonomy and sequence labels as a function of taxonomy" );
+ .setToolTipText( "To colorize node labels as a function of taxonomy" );
addJCheckBox( _color_acc_species, ch_panel );
add( ch_panel );
break;
+ case Configuration.color_according_to_sequence:
+ _color_acc_sequence = new JCheckBox( title );
+ _color_acc_sequence
+ .setToolTipText( "To colorize node labels as a function of sequence name" );
+ addJCheckBox( _color_acc_sequence, ch_panel );
+ add( ch_panel );
+ break;
case Configuration.color_according_to_annotation:
_color_according_to_annotation = new JCheckBox( title );
_color_according_to_annotation
addJCheckBox( getShowEventsCb(), ch_panel );
add( ch_panel );
break;
- case Configuration.color_branches:
- _color_branches_cb = new JCheckBox( title );
- getColorBranchesCb().setToolTipText( "To use branch color values, if present" );
- addJCheckBox( getColorBranchesCb(), ch_panel );
+ case Configuration.use_style:
+ _use_visual_styles_cb = new JCheckBox( title );
+ getUseVisualStylesCb()
+ .setToolTipText( "To use visual styles (node colors, fonts) and branch colors, if present" );
+ addJCheckBox( getUseVisualStylesCb(), ch_panel );
add( ch_panel );
break;
case Configuration.width_branches:
return getMainPanel().getOptions();
}
- JLabel getSearchFoundCountsLabel() {
- return _search_found_label;
+ JLabel getSearchFoundCountsLabel0() {
+ return _search_found_label_0;
}
- JButton getSearchResetButton() {
- return _search_reset_button;
+ JLabel getSearchFoundCountsLabel1() {
+ return _search_found_label_1;
}
- JTextField getSearchTextField() {
- return _search_tf;
+ JButton getSearchResetButton0() {
+ return _search_reset_button_0;
+ }
+
+ JButton getSearchResetButton1() {
+ return _search_reset_button_1;
+ }
+
+ JTextField getSearchTextField0() {
+ return _search_tf_0;
+ }
+
+ JTextField getSearchTextField1() {
+ return _search_tf_1;
}
List<String> getSingleClickToNames() {
Map<String, Color> getSpeciesColors() {
return _species_colors;
}
+
+ Map<String, Color> getSequenceColors() {
+ return _sequence_colors;
+ }
boolean isAntialiasScreenText() {
return true;
boolean isColorAccordingToTaxonomy() {
return ( ( _color_acc_species != null ) && _color_acc_species.isSelected() );
}
+
+ boolean isColorAccordingToSequence() {
+ return ( ( _color_acc_sequence != null ) && _color_acc_sequence.isSelected() );
+ }
- boolean isColorBranches() {
- return ( ( ( getColorBranchesCb() != null ) && getColorBranchesCb().isSelected() ) || ( ( getColorBranchesCb() == null ) && _color_branches ) );
+ boolean isUseVisualStyles() {
+ return ( ( ( getUseVisualStylesCb() != null ) && getUseVisualStylesCb().isSelected() ) || ( ( getUseVisualStylesCb() == null ) && _color_branches ) );
}
boolean isDrawPhylogram() {
getIsDrawPhylogramList().remove( index );
}
- void search() {
+ void search0() {
final MainPanel main_panel = getMainPanel();
final Phylogeny tree = main_panel.getCurrentPhylogeny();
if ( ( tree == null ) || tree.isEmpty() ) {
return;
}
- String query = getSearchTextField().getText();
+ String query = getSearchTextField0().getText();
if ( query != null ) {
query = query.trim();
}
+ if ( !ForesterUtil.isEmpty( query ) ) {
+ search0( main_panel, tree, query );
+ }
else {
- getSearchFoundCountsLabel().setVisible( false );
- getSearchResetButton().setEnabled( false );
- getSearchResetButton().setVisible( false );
- searchReset();
+ getSearchFoundCountsLabel0().setVisible( false );
+ getSearchResetButton0().setEnabled( false );
+ getSearchResetButton0().setVisible( false );
+ searchReset0();
+ }
+ }
+
+ void search1() {
+ final MainPanel main_panel = getMainPanel();
+ final Phylogeny tree = main_panel.getCurrentPhylogeny();
+ if ( ( tree == null ) || tree.isEmpty() ) {
+ return;
+ }
+ String query = getSearchTextField1().getText();
+ if ( query != null ) {
+ query = query.trim();
}
if ( !ForesterUtil.isEmpty( query ) ) {
- search( main_panel, tree, query );
+ search1( main_panel, tree, query );
}
else {
- getSearchFoundCountsLabel().setVisible( false );
- getSearchResetButton().setEnabled( false );
- getSearchResetButton().setVisible( false );
- searchReset();
+ getSearchFoundCountsLabel1().setVisible( false );
+ getSearchResetButton1().setEnabled( false );
+ getSearchResetButton1().setVisible( false );
+ searchReset1();
+ }
+ }
+
+ void searchReset0() {
+ if ( getMainPanel().getCurrentTreePanel() != null ) {
+ getMainPanel().getCurrentTreePanel().setFoundNodes0( null );
}
}
- void searchReset() {
+ void searchReset1() {
if ( getMainPanel().getCurrentTreePanel() != null ) {
- getMainPanel().getCurrentTreePanel().setFoundNodes( null );
+ getMainPanel().getCurrentTreePanel().setFoundNodes1( null );
}
}
_color_acc_species.setSelected( state );
}
break;
+ case Configuration.color_according_to_sequence:
+ if ( _color_acc_sequence != null ) {
+ _color_acc_sequence.setSelected( state );
+ }
+ break;
case Configuration.color_according_to_annotation:
if ( _color_according_to_annotation != null ) {
_color_according_to_annotation.setSelected( state );
getShowEventsCb().setSelected( state );
}
break;
- case Configuration.color_branches:
- if ( getColorBranchesCb() != null ) {
- getColorBranchesCb().setSelected( state );
+ case Configuration.use_style:
+ if ( getUseVisualStylesCb() != null ) {
+ getUseVisualStylesCb().setSelected( state );
}
break;
case Configuration.width_branches:
else if ( action == _open_pdb_item ) {
setActionWhenNodeClicked( NodeClickAction.OPEN_PDB_WEB );
}
+ else if ( action == _color_node_font_item ) {
+ setActionWhenNodeClicked( NodeClickAction.COLOR_NODE_FONT );
+ }
+ else if ( action == _change_node_font_item ) {
+ setActionWhenNodeClicked( NodeClickAction.CHANGE_NODE_FONT );
+ }
else {
throw new RuntimeException( "unknown action: " + action );
}
// }
}
- void setSearchFoundCountsOnLabel( final int counts ) {
- getSearchFoundCountsLabel().setText( "Found: " + counts );
+ void setSearchFoundCountsOnLabel0( final int counts ) {
+ getSearchFoundCountsLabel0().setText( "Found: " + counts );
+ }
+
+ void setSearchFoundCountsOnLabel1( final int counts ) {
+ getSearchFoundCountsLabel1().setText( "Found: " + counts );
}
void setShowEvents( final boolean show_events ) {
void setSpeciesColors( final Map<String, Color> species_colors ) {
_species_colors = species_colors;
}
+
+ void setSequenceColors( final Map<String, Color> sequence_colors ) {
+ _sequence_colors = sequence_colors;
+ }
/* GUILHEM_END */
/*
endClickToOptions();
// Zoom and quick edit buttons
addButtons();
- setupSearchTools();
+ setupSearchTools0();
+ setupSearchTools1();
}
void setUpControlsForDomainStrucures() {
addJButton( _incr_domain_structure_evalue_thr, d2_panel );
}
- void setupSearchTools() {
+ void setupSearchTools0() {
final String tip = "Enter text to search for. Use ',' for multiple searches (logical OR) and '+' for logical AND.";
- final JLabel search_label = new JLabel( "Search:" );
+ final JLabel search_label = new JLabel( "Search (A):" );
search_label.setFont( ControlPanel.jcb_bold_font );
if ( !getConfiguration().isUseNativeUI() ) {
search_label.setForeground( getConfiguration().getGuiCheckboxTextColor() );
}
add( search_label );
search_label.setToolTipText( tip );
- _search_found_label = new JLabel();
- getSearchFoundCountsLabel().setVisible( false );
- _search_found_label.setFont( ControlPanel.jcb_bold_font );
+ _search_found_label_0 = new JLabel();
+ getSearchFoundCountsLabel0().setVisible( false );
+ _search_found_label_0.setFont( ControlPanel.jcb_bold_font );
if ( !getConfiguration().isUseNativeUI() ) {
- _search_found_label.setForeground( getConfiguration().getGuiCheckboxTextColor() );
+ _search_found_label_0.setForeground( getConfiguration().getGuiCheckboxTextColor() );
}
- _search_tf = new JTextField( 3 );
- _search_tf.setToolTipText( tip );
- _search_tf.setEditable( true );
+ _search_tf_0 = new JTextField( 3 );
+ _search_tf_0.setToolTipText( tip );
+ _search_tf_0.setEditable( true );
if ( !getConfiguration().isUseNativeUI() ) {
- _search_tf.setForeground( getConfiguration().getGuiMenuBackgroundColor() );
- _search_tf.setBackground( getConfiguration().getGuiCheckboxTextColor() );
- _search_tf.setBorder( null );
- }
- _search_reset_button = new JButton();
- getSearchResetButton().setText( "Reset" );
- getSearchResetButton().setEnabled( false );
- getSearchResetButton().setVisible( false );
+ _search_tf_0.setForeground( getConfiguration().getGuiMenuBackgroundColor() );
+ _search_tf_0.setBackground( getConfiguration().getGuiCheckboxTextColor() );
+ _search_tf_0.setBorder( null );
+ }
+ _search_reset_button_0 = new JButton();
+ getSearchResetButton0().setText( "Reset" );
+ getSearchResetButton0().setEnabled( false );
+ getSearchResetButton0().setVisible( false );
final JPanel s_panel_1 = new JPanel( new BorderLayout() );
final JPanel s_panel_2 = new JPanel( new GridLayout( 1, 2, 0, 0 ) );
s_panel_1.setBackground( getBackground() );
@Override
public void keyReleased( final KeyEvent key_event ) {
- search();
+ search0();
displayedPhylogenyMightHaveChanged( true );
}
};
@Override
public void actionPerformed( final ActionEvent e ) {
- searchReset();
- setSearchFoundCountsOnLabel( 0 );
- getSearchFoundCountsLabel().setVisible( false );
- getSearchTextField().setText( "" );
- getSearchResetButton().setEnabled( false );
- getSearchResetButton().setVisible( false );
+ searchReset0();
+ setSearchFoundCountsOnLabel0( 0 );
+ getSearchFoundCountsLabel0().setVisible( false );
+ getSearchTextField0().setText( "" );
+ getSearchResetButton0().setEnabled( false );
+ getSearchResetButton0().setVisible( false );
displayedPhylogenyMightHaveChanged( true );
}
};
- _search_reset_button.addActionListener( action_listener );
- _search_tf.addKeyListener( key_adapter );
- addJTextField( _search_tf, s_panel_1 );
- s_panel_2.add( _search_found_label );
- addJButton( _search_reset_button, s_panel_2 );
+ _search_reset_button_0.addActionListener( action_listener );
+ _search_tf_0.addKeyListener( key_adapter );
+ addJTextField( _search_tf_0, s_panel_1 );
+ s_panel_2.add( _search_found_label_0 );
+ addJButton( _search_reset_button_0, s_panel_2 );
+ }
+
+ void setupSearchTools1() {
+ final String tip = "Enter text to search for. Use ',' for multiple searches (logical OR) and '+' for logical AND.";
+ final JLabel search_label = new JLabel( "Search (B):" );
+ search_label.setFont( ControlPanel.jcb_bold_font );
+ if ( !getConfiguration().isUseNativeUI() ) {
+ search_label.setForeground( getConfiguration().getGuiCheckboxTextColor() );
+ }
+ add( search_label );
+ search_label.setToolTipText( tip );
+ _search_found_label_1 = new JLabel();
+ getSearchFoundCountsLabel1().setVisible( false );
+ _search_found_label_1.setFont( ControlPanel.jcb_bold_font );
+ if ( !getConfiguration().isUseNativeUI() ) {
+ _search_found_label_1.setForeground( getConfiguration().getGuiCheckboxTextColor() );
+ }
+ _search_tf_1 = new JTextField( 3 );
+ _search_tf_1.setToolTipText( tip );
+ _search_tf_1.setEditable( true );
+ if ( !getConfiguration().isUseNativeUI() ) {
+ _search_tf_1.setForeground( getConfiguration().getGuiMenuBackgroundColor() );
+ _search_tf_1.setBackground( getConfiguration().getGuiCheckboxTextColor() );
+ _search_tf_1.setBorder( null );
+ }
+ _search_reset_button_1 = new JButton();
+ getSearchResetButton1().setText( "Reset" );
+ getSearchResetButton1().setEnabled( false );
+ getSearchResetButton1().setVisible( false );
+ final JPanel s_panel_1 = new JPanel( new BorderLayout() );
+ final JPanel s_panel_2 = new JPanel( new GridLayout( 1, 2, 0, 0 ) );
+ s_panel_1.setBackground( getBackground() );
+ add( s_panel_1 );
+ s_panel_2.setBackground( getBackground() );
+ add( s_panel_2 );
+ final KeyAdapter key_adapter = new KeyAdapter() {
+
+ @Override
+ public void keyReleased( final KeyEvent key_event ) {
+ search1();
+ displayedPhylogenyMightHaveChanged( true );
+ }
+ };
+ final ActionListener action_listener = new ActionListener() {
+
+ @Override
+ public void actionPerformed( final ActionEvent e ) {
+ searchReset1();
+ setSearchFoundCountsOnLabel1( 0 );
+ getSearchFoundCountsLabel1().setVisible( false );
+ getSearchTextField1().setText( "" );
+ getSearchResetButton1().setEnabled( false );
+ getSearchResetButton1().setVisible( false );
+ displayedPhylogenyMightHaveChanged( true );
+ }
+ };
+ _search_reset_button_1.addActionListener( action_listener );
+ _search_tf_1.addKeyListener( key_adapter );
+ addJTextField( _search_tf_1, s_panel_1 );
+ s_panel_2.add( _search_found_label_1 );
+ addJButton( _search_reset_button_1, s_panel_2 );
}
void showAnnotations() {
if ( _color_acc_species != null ) {
_color_acc_species.setSelected( false );
}
+ if ( _color_acc_sequence != null ) {
+ _color_acc_sequence.setSelected( false );
+ }
_mainpanel.getCurrentTreePanel().repaint();
}
.getPhylogenyGraphicsType() );
}
getMainPanel().getCurrentTreePanel().updateSubSuperTreeButton();
- getMainPanel().getControlPanel().search();
+ getMainPanel().getControlPanel().search0();
+ getMainPanel().getControlPanel().search1();
getMainPanel().getControlPanel().updateDomainStructureEvaluethresholdDisplay();
getSequenceRelationTypeBox().removeAllItems();
for( final SequenceRelation.SEQUENCE_RELATION_TYPE type : getMainPanel().getCurrentPhylogeny()
private void init() {
_draw_phylogram = new ArrayList<Boolean>();
setSpeciesColors( new HashMap<String, Color>() );
+ setSequenceColors( new HashMap<String, Color>() );
setAnnotationColors( new HashMap<String, Color>() );
}
return getIsDrawPhylogramList().get( index );
}
- private void search( final MainPanel main_panel, final Phylogeny tree, final String query_str ) {
- getSearchFoundCountsLabel().setVisible( true );
- getSearchResetButton().setEnabled( true );
- getSearchResetButton().setVisible( true );
+ private void search0( final MainPanel main_panel, final Phylogeny tree, final String query_str ) {
+ getSearchFoundCountsLabel0().setVisible( true );
+ getSearchResetButton0().setEnabled( true );
+ getSearchResetButton0().setVisible( true );
+ String[] queries = null;
+ List<PhylogenyNode> nodes = null;
+ if ( query_str.indexOf( ',' ) >= 0 ) {
+ queries = query_str.split( ",+" );
+ }
+ else {
+ queries = new String[ 1 ];
+ queries[ 0 ] = query_str.trim();
+ }
+ if ( ( queries != null ) && ( queries.length > 0 ) ) {
+ nodes = new ArrayList<PhylogenyNode>();
+ for( String query : queries ) {
+ if ( ForesterUtil.isEmpty( query ) ) {
+ continue;
+ }
+ query = query.trim();
+ if ( query.indexOf( '+' ) >= 0 ) {
+ nodes.addAll( PhylogenyMethods.searchDataLogicalAnd( query.split( "\\++" ),
+ tree,
+ getOptions().isSearchCaseSensitive(),
+ !getOptions().isMatchWholeTermsOnly(),
+ isShowDomainArchitectures() ) );
+ }
+ else {
+ nodes.addAll( PhylogenyMethods.searchData( query,
+ tree,
+ getOptions().isSearchCaseSensitive(),
+ !getOptions().isMatchWholeTermsOnly(),
+ isShowDomainArchitectures() ) );
+ }
+ }
+ if ( getOptions().isInverseSearchResult() ) {
+ final List<PhylogenyNode> all = PhylogenyMethods.obtainAllNodesAsList( tree );
+ all.removeAll( nodes );
+ nodes = all;
+ }
+ }
+ if ( ( nodes != null ) && ( nodes.size() > 0 ) ) {
+ main_panel.getCurrentTreePanel().setFoundNodes0( new HashSet<Long>() );
+ for( final PhylogenyNode node : nodes ) {
+ main_panel.getCurrentTreePanel().getFoundNodes0().add( node.getId() );
+ }
+ setSearchFoundCountsOnLabel0( nodes.size() );
+ }
+ else {
+ setSearchFoundCountsOnLabel0( 0 );
+ searchReset0();
+ }
+ }
+
+ private void search1( final MainPanel main_panel, final Phylogeny tree, final String query_str ) {
+ getSearchFoundCountsLabel1().setVisible( true );
+ getSearchResetButton1().setEnabled( true );
+ getSearchResetButton1().setVisible( true );
String[] queries = null;
List<PhylogenyNode> nodes = null;
if ( query_str.indexOf( ',' ) >= 0 ) {
}
}
if ( ( nodes != null ) && ( nodes.size() > 0 ) ) {
- main_panel.getCurrentTreePanel().setFoundNodes( new HashSet<Long>() );
+ main_panel.getCurrentTreePanel().setFoundNodes1( new HashSet<Long>() );
for( final PhylogenyNode node : nodes ) {
- main_panel.getCurrentTreePanel().getFoundNodes().add( node.getId() );
+ main_panel.getCurrentTreePanel().getFoundNodes1().add( node.getId() );
}
- setSearchFoundCountsOnLabel( nodes.size() );
+ setSearchFoundCountsOnLabel1( nodes.size() );
}
else {
- setSearchFoundCountsOnLabel( 0 );
- searchReset();
+ setSearchFoundCountsOnLabel1( 0 );
+ searchReset1();
}
}
}
cb_index++;
}
+ if ( _configuration.doDisplayClickToOption( Configuration.color_node_font ) ) {
+ _color_node_font_item = cb_index;
+ addClickToOption( Configuration.color_node_font,
+ _configuration.getClickToTitle( Configuration.color_node_font ) );
+ if ( default_option == Configuration.color_node_font ) {
+ selected_index = cb_index;
+ }
+ cb_index++;
+ }
+ if ( _configuration.doDisplayClickToOption( Configuration.change_node_font ) ) {
+ _change_node_font_item = cb_index;
+ addClickToOption( Configuration.change_node_font,
+ _configuration.getClickToTitle( Configuration.change_node_font ) );
+ if ( default_option == Configuration.change_node_font ) {
+ selected_index = cb_index;
+ }
+ cb_index++;
+ }
if ( _configuration.doDisplayClickToOption( Configuration.color_subtree ) ) {
_color_subtree_cb_item = cb_index;
addClickToOption( Configuration.color_subtree, _configuration.getClickToTitle( Configuration.color_subtree ) );
setCheckbox( Configuration.display_internal_data,
_configuration.doCheckOption( Configuration.display_internal_data ) );
}
+
+
+ if ( _configuration.doDisplayOption( Configuration.color_according_to_sequence ) ) {
+ addCheckbox( Configuration.color_according_to_sequence,
+ _configuration.getDisplayTitle( Configuration.color_according_to_sequence ) );
+ setCheckbox( Configuration.color_according_to_sequence,
+ _configuration.doCheckOption( Configuration.color_according_to_sequence ) );
+ }
+
+
+
+
if ( _configuration.doDisplayOption( Configuration.color_according_to_species ) ) {
addCheckbox( Configuration.color_according_to_species,
_configuration.getDisplayTitle( Configuration.color_according_to_species ) );
setCheckbox( Configuration.color_according_to_annotation,
_configuration.doCheckOption( Configuration.color_according_to_annotation ) );
}
- if ( _configuration.doDisplayOption( Configuration.color_branches ) ) {
- addCheckbox( Configuration.color_branches, _configuration.getDisplayTitle( Configuration.color_branches ) );
- setCheckbox( Configuration.color_branches, _configuration.doCheckOption( Configuration.color_branches ) );
+ if ( _configuration.doDisplayOption( Configuration.use_style ) ) {
+ addCheckbox( Configuration.use_style, _configuration.getDisplayTitle( Configuration.use_style ) );
+ setCheckbox( Configuration.use_style, _configuration.doCheckOption( Configuration.use_style ) );
}
if ( _configuration.doDisplayOption( Configuration.width_branches ) ) {
addCheckbox( Configuration.width_branches, _configuration.getDisplayTitle( Configuration.width_branches ) );
SHOW_DATA,
SORT_DESCENDENTS,
SUBTREE,
- SWAP;
+ SWAP,
+ CHANGE_NODE_FONT,
+ COLOR_NODE_FONT;
}
}
git://source.jalview.org / jalview.git / blobdiff